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噬菌体P2 FETUD尾基因操纵子中的程序性翻译移码

Programmed translational frameshift in the bacteriophage P2 FETUD tail gene operon.

作者信息

Christie Gail E, Temple Louise M, Bartlett Becky A, Goodwin Tina S

机构信息

Department of Microbiology and Immunology, Virginia Commonwealth University, Richmond, Virginia 23298-0678, USA.

出版信息

J Bacteriol. 2002 Dec;184(23):6522-31. doi: 10.1128/JB.184.23.6522-6531.2002.

Abstract

The major structural components of the P2 contractile tail are encoded in the FETUD tail gene operon. The sequences of genes F(I) and F(II), encoding the major tail sheath and tail tube proteins, have been reported previously (L. M. Temple, S. L. Forsburg, R. Calendar, and G. E. Christie, Virology 181:353-358, 1991). Sequence analysis of the remainder of this operon and the locations of amber mutations Eam30, Tam5, Tam64, Tam215, Uam25, Uam77, Uam92, and Dam6 and missense mutation Ets55 identified the coding regions for genes E, T, U, and D, completing the sequence determination of the P2 genome. Inspection of the DNA sequence revealed a new open reading frame overlapping the end of the essential tail gene E. Lack of an apparent translation initiation site and identification of a putative sequence for a programmed translational frameshift within the E gene suggested that this new reading frame (E') might be translated as an extension of gene E, following a -1 translational frameshift. Complementation analysis demonstrated that E' was essential for P2 lytic growth. Analysis of fusion polypeptides verified that this reading frame was translated as a -1 frameshift extension of gpE, with a frequency of approximately 10%. The arrangement of these two genes within the tail gene cluster of phage P2 and their coupling via a translational frameshift appears to be conserved among P2-related phages. This arrangement shows a striking parallel to the organization in the tail gene cluster of phage lambda, despite a lack of amino acid sequence similarity between the tail gene products of these phage families.

摘要

P2收缩尾的主要结构成分由FETUD尾基因操纵子编码。编码主要尾鞘和尾管蛋白的基因F(I)和F(II)的序列先前已有报道(L.M. Temple、S.L. Forsburg、R. Calendar和G.E. Christie,《病毒学》181:353 - 358,1991)。对该操纵子其余部分的序列分析以及琥珀突变Eam30、Tam5、Tam64、Tam215、Uam25、Uam77、Uam92和Dam6以及错义突变Ets55的定位确定了基因E、T、U和D的编码区域,完成了P2基因组的序列测定。对DNA序列的检查揭示了一个新的开放阅读框,它与必需尾基因E的末端重叠。缺乏明显的翻译起始位点以及在E基因内鉴定出一个假定的程序性翻译移码序列,这表明这个新的阅读框(E')可能在 -1翻译移码后作为基因E的延伸进行翻译。互补分析表明E'对P2裂解生长至关重要。对融合多肽的分析证实这个阅读框作为gpE的 -1移码延伸进行翻译,频率约为10%。这两个基因在噬菌体P2尾基因簇中的排列以及它们通过翻译移码的偶联在与P2相关的噬菌体中似乎是保守的。尽管这些噬菌体家族的尾基因产物之间缺乏氨基酸序列相似性,但这种排列与噬菌体λ尾基因簇中的组织呈现出惊人的平行关系。

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