Paustian Michael L, May Barbara J, Cao Dongwei, Boley Daniel, Kapur Vivek
Biomedical Genomics Center and Departments of Microbiology and Veterinary Pathobiology. Department of Computer Science, University of Minnesota, St. Paul, Minnesota 55108, USA.
J Bacteriol. 2002 Dec;184(23):6714-20. doi: 10.1128/JB.184.23.6714-6720.2002.
Pasteurella multocida was grown in iron-free chemically defined medium supplemented with hemoglobin, transferrin, ferritin, and ferric citrate as iron sources. Whole-genome DNA microarrays were used to monitor global gene expression over seven time points after the addition of the defined iron source to the medium. This resulted in a set of data containing over 338,000 gene expression observations. On average, 12% of P. multocida genes were differentially expressed under any single condition. A majority of these genes encoded P. multocida proteins that were involved in either transport and binding or were annotated as hypothetical proteins. Several trends are evident when the data from different iron sources are compared. In general, only two genes (ptsN and sapD) were expressed at elevated levels under all of the conditions tested. The results also show that genes with increased expression in the presence of hemoglobin did not respond to transferrin or ferritin as an iron source. Correspondingly, genes with increased expression in the transferrin and ferritin experiments were expressed at reduced levels when hemoglobin was supplied as the sole iron source. Finally, the data show that genes that were most responsive to the presence of ferric citrate did not follow a trend similar to that of the other iron sources, suggesting that different pathways respond to inorganic or organic sources of iron in P. multocida. Taken together, our results demonstrate that unique subsets of P. multocida genes are expressed in response to different iron sources and that many of these genes have yet to be functionally characterized.
多杀巴斯德菌在添加血红蛋白、转铁蛋白、铁蛋白和柠檬酸铁作为铁源的无铁化学限定培养基中培养。使用全基因组DNA微阵列监测在培养基中添加限定铁源后七个时间点的全局基因表达。这产生了一组包含超过338,000个基因表达观察值的数据。平均而言,在任何单一条件下,多杀巴斯德菌中12%的基因存在差异表达。这些基因中的大多数编码参与转运和结合的多杀巴斯德菌蛋白,或被注释为假定蛋白。比较来自不同铁源的数据时,有几个趋势很明显。一般来说,在所有测试条件下,只有两个基因(ptsN和sapD)表达水平升高。结果还表明,在血红蛋白存在下表达增加的基因对转铁蛋白或铁蛋白作为铁源没有反应。相应地,在转铁蛋白和铁蛋白实验中表达增加的基因,当以血红蛋白作为唯一铁源时,表达水平降低。最后,数据表明,对柠檬酸铁存在反应最强烈的基因没有遵循与其他铁源类似的趋势,这表明多杀巴斯德菌中不同的途径对无机或有机铁源有反应。综上所述,我们的结果表明,多杀巴斯德菌基因的独特子集响应不同铁源而表达,并且这些基因中的许多尚未进行功能表征。