May B J, Zhang Q, Li L L, Paustian M L, Whittam T S, Kapur V
Department of Veterinary Pathobiology, University of Minnesota, St. Paul, MN 55108, USA.
Proc Natl Acad Sci U S A. 2001 Mar 13;98(6):3460-5. doi: 10.1073/pnas.051634598. Epub 2001 Mar 6.
We present here the complete genome sequence of a common avian clone of Pasteurella multocida, Pm70. The genome of Pm70 is a single circular chromosome 2,257,487 base pairs in length and contains 2,014 predicted coding regions, 6 ribosomal RNA operons, and 57 tRNAs. Genome-scale evolutionary analyses based on pairwise comparisons of 1,197 orthologous sequences between P. multocida, Haemophilus influenzae, and Escherichia coli suggest that P. multocida and H. influenzae diverged approximately 270 million years ago and the gamma subdivision of the proteobacteria radiated about 680 million years ago. Two previously undescribed open reading frames, accounting for approximately 1% of the genome, encode large proteins with homology to the virulence-associated filamentous hemagglutinin of Bordetella pertussis. Consistent with the critical role of iron in the survival of many microbial pathogens, in silico and whole-genome microarray analyses identified more than 50 Pm70 genes with a potential role in iron acquisition and metabolism. Overall, the complete genomic sequence and preliminary functional analyses provide a foundation for future research into the mechanisms of pathogenesis and host specificity of this important multispecies pathogen.
我们在此展示多杀性巴氏杆菌常见禽源克隆株Pm70的完整基因组序列。Pm70的基因组为一条长度为2,257,487碱基对的单环状染色体,包含2,014个预测的编码区、6个核糖体RNA操纵子和57个转运RNA。基于多杀性巴氏杆菌、流感嗜血杆菌和大肠杆菌之间1,197个直系同源序列的成对比较进行的全基因组进化分析表明,多杀性巴氏杆菌和流感嗜血杆菌大约在2.7亿年前分化,而变形菌门的γ亚群大约在6.8亿年前辐射分化。两个以前未描述的开放阅读框,约占基因组的1%,编码与百日咳博德特氏菌毒力相关的丝状血凝素具有同源性的大蛋白。与铁在许多微生物病原体生存中的关键作用一致,通过计算机分析和全基因组微阵列分析确定了50多个在铁获取和代谢中可能起作用的Pm70基因。总体而言,完整的基因组序列和初步功能分析为今后研究这种重要的多宿主病原体的致病机制和宿主特异性奠定了基础。