Onishi Hirofumi, Ohki Takashi, Mochizuki Naoki, Morales Manuel F
Department of Structural Analysis, National Cardiovascular Center Research Institute, Fujishiro-dai, Suita, Osaka 565-8565, Japan.
Proc Natl Acad Sci U S A. 2002 Nov 26;99(24):15339-44. doi: 10.1073/pnas.242604099. Epub 2002 Nov 12.
On the basis of the crystallographic snapshots of Rayment and his collaborators [Fisher, A. J., Smith, C. A., Thoden, J. B., Smith, R., Sutoh, K., Holden, H. M., & Rayment, I. (1995) Biochemistry 34, 8960-8972], we have understood some basic principles about the early stages of myosin catalysis, namely, ATP is drawn into the active site, over which the cleft closes. Catalyzed hydrolysis occurs, and the first product (orthophosphate) is released from the backdoor of the cleft. In the cleft-closing process, the active site incidentally signals its movement to a particular remote tryptophan residue, Trp-512. In this work, we expand on some of these ideas to rationalize the behavior of a mutated system in action. From the behavior of recombinant myosin systems in which Arg-247 and Glu-470 were substituted in several ways, we draw the conclusions that (i) the force between Arg-247 and gamma-phosphate of ATP may assist in closing the cleft, and incidentally in signaling to the remote Trp, and (ii) in catalysis, Glu-470 is involved in holding the lytic H(2)O (w(1)). We also propose that w(1) and also a second water, w(2), enter into a structure that bridges Glu-470 and the gamma-phosphate of bound ATP, and at the same time positions w(1) for its in-line hydrolytic attack.
基于雷门特及其合作者的晶体学快照[费舍尔,A. J.,史密斯,C. A.,索登,J. B.,史密斯,R.,须藤,K.,霍尔登,H. M.,&雷门特,I.(1995年)《生物化学》34卷,8960 - 8972页],我们已经了解了一些关于肌球蛋白催化早期阶段的基本原理,即,ATP被吸入活性位点,裂隙在其上方关闭。催化水解发生,第一个产物(正磷酸盐)从裂隙的后口释放。在裂隙关闭过程中,活性位点顺便向一个特定的远程色氨酸残基Trp - 512发出其移动信号。在这项工作中,我们扩展了其中一些观点,以解释一个突变系统在作用中的行为。从以多种方式替换了精氨酸 - 247和谷氨酸 - 470的重组肌球蛋白系统的行为中,我们得出以下结论:(i)精氨酸 - 247与ATP的γ - 磷酸之间的力可能有助于关闭裂隙,并顺便向远程色氨酸发出信号,以及(ii)在催化过程中,谷氨酸 - 470参与保持裂解性的H₂O(w₁)。我们还提出,w₁以及第二个水分子w₂进入一个连接谷氨酸 - 470和结合ATP的γ - 磷酸的结构,同时将w₁定位以便进行共线水解攻击。