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结核分枝杆菌间隔寡核苷酸分型的全球分布

Global distribution of Mycobacterium tuberculosis spoligotypes.

作者信息

Filliol Ingrid, Driscoll Jeffrey R, Van Soolingen Dick, Kreiswirth Barry N, Kremer Kristin, Valétudie Georges, Anh Dang Duc, Barlow Rachael, Banerjee Dilip, Bifani Pablo J, Brudey Karine, Cataldi Angel, Cooksey Robert C, Cousins Debby V, Dale Jeremy W, Dellagostin Odir A, Drobniewski Francis, Engelmann Guido, Ferdinand Séverine, Gascoyne-Binzi Deborah, Gordon Max, Gutierrez M Cristina, Haas Walter H, Heersma Herre, Källenius Gunilla, Kassa-Kelembho Eric, Koivula Tuija, Ly Ho Minh, Makristathis Athanasios, Mammina Caterina, Martin Gerald, Moström Peter, Mokrousov Igor, Narbonne Valérie, Narvskaya Olga, Nastasi Antonino, Niobe-Eyangoh Sara Ngo, Pape Jean W, Rasolofo-Razanamparany Voahangy, Ridell Malin, Rossetti M Lucia, Stauffer Fritz, Suffys Philip N, Takiff Howard, Texier-Maugein Jeanne, Vincent Véronique, De Waard Jacobus H, Sola Christophe, Rastogi Nalin

机构信息

Unité de la tuberculose et des Mycobactéries, Institut Pasteur, Pointe-á-Pitre, Guadeloupe, French West Indies.

出版信息

Emerg Infect Dis. 2002 Nov;8(11):1347-9. doi: 10.3201/eid0811.020125.

DOI:10.3201/eid0811.020125
PMID:12453368
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2738532/
Abstract

We present a short summary of recent observations on the global distribution of the major clades of the Mycobacterium tuberculosis complex, the causative agent of tuberculosis. This global distribution was defined by data-mining of an international spoligotyping database, SpolDB3. This database contains 11708 patterns from as many clinical isolates originating from more than 90 countries. The 11708 spoligotypes were clustered into 813 shared types. A total of 1300 orphan patterns (clinical isolates showing a unique spoligotype) were also detected.

摘要

我们简要总结了近期关于结核分枝杆菌复合群主要进化枝全球分布情况的观察结果,结核分枝杆菌复合群是结核病的病原体。这种全球分布是通过对国际间隔寡核苷酸分型数据库SpolDB3进行数据挖掘来确定的。该数据库包含来自90多个国家的11708株临床分离株的分型模式。这11708个寡核苷酸分型被聚类为813个共享型。还检测到总共1300个孤儿模式(临床分离株显示独特的寡核苷酸分型)。

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本文引用的文献

1
Worldwide occurrence of Beijing/W strains of Mycobacterium tuberculosis: a systematic review.结核分枝杆菌北京/W菌株在全球的出现:一项系统综述。
Emerg Infect Dis. 2002 Aug;8(8):843-9. doi: 10.3201/eid0805.020002.
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A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosis.一种用于结核分枝杆菌间隔区寡核苷酸分型的数据挖掘方法。
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Mycobacterium tuberculosis phylogeny reconstruction based on combined numerical analysis with IS1081, IS6110, VNTR, and DR-based spoligotyping suggests the existence of two new phylogeographical clades.基于IS1081、IS6110、可变数目串联重复序列(VNTR)和基于间隔区寡核苷酸分型(DR-based spoligotyping)的联合数值分析重建结核分枝杆菌系统发育,提示存在两个新的系统地理分支。
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Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units.基于分枝杆菌散布重复单位的用于结核分枝杆菌全球流行病学研究的自动化高通量基因分型
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Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology.通过DNA指纹图谱技术进行结核分枝杆菌菌株鉴定:标准化方法建议
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