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关于涉及氨基酸和肽的晶体复合物的X射线研究。XL. DL-和L-精氨酸丙二酸复合物中的构象变异性、聚集的重复和新特征以及手性效应

X-ray studies on crystalline complexes involving amino acids and peptides. XL. Conformational variability, recurring and new features of aggregation, and effect of chirality in the malonic acid complexes of DL- and L-arginine.

作者信息

Saraswathi N T, Vijayan M

机构信息

Molecular Biophysics Unit, Indian Institute of Science, Bangalore - 560 012, India.

出版信息

Acta Crystallogr B. 2002 Dec;58(Pt 6):1051-6. doi: 10.1107/s0108768102018827. Epub 2002 Nov 28.

DOI:10.1107/s0108768102018827
PMID:12456986
Abstract

The crystal structures of the complexes of malonic acid with DL- and L-arginine, which contain positively charged argininium ions and negatively charged semimalonate ions, further demonstrate the conformational flexibility of amino acids. A larger proportion of folded conformations than would be expected on the basis of steric consideration appears to occur in arginine, presumably because of the requirements of hydrogen bonding. The aggregation pattern in the DL-arginine complex bears varying degrees of resemblance to patterns observed in other similar structures. An antiparallel hydrogen-bonded dimeric arrangement of arginine, and to a lesser extent lysine, is a recurring motif. Similarities also exist among the structures in the interactions with this motif and its assembly into larger features of aggregation. However, the aggregation pattern observed in the L-arginine complex differs from any observed so far, which demonstrates that all the general patterns of amino-acid aggregation have not yet been elucidated. The two complexes represent cases where the reversal of the chirality of half the amino-acid molecules leads to a fundamentally different aggregation pattern.

摘要

丙二酸与DL-精氨酸和L-精氨酸形成的配合物的晶体结构,其中含有带正电荷的精氨酸离子和带负电荷的半丙二酸离子,进一步证明了氨基酸的构象灵活性。与基于空间位阻考虑所预期的相比,精氨酸中似乎出现了更大比例的折叠构象,这大概是由于氢键的需求。DL-精氨酸配合物中的聚集模式与在其他类似结构中观察到的模式有不同程度的相似性。精氨酸以及程度稍轻的赖氨酸的反平行氢键二聚体排列是一个反复出现的基序。在与该基序的相互作用及其组装成更大的聚集特征方面,这些结构之间也存在相似性。然而,在L-精氨酸配合物中观察到的聚集模式与迄今为止观察到的任何模式都不同,这表明氨基酸聚集的所有一般模式尚未阐明。这两种配合物代表了这样的情况,即一半氨基酸分子手性的反转导致了根本不同的聚集模式。

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