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关于涉及氨基酸和肽的晶体复合物的X射线研究。第二十七部分。精氨酸及其与甲酸复合物结构中的手性、特定相互作用和特征聚集模式的影响。

X-ray studies on crystalline complexes involving amino acids and peptides. XXVII. Effect of chirality, specific interactions and characteristic aggregation patterns in the structures of arginine and its complexes with formic acid.

作者信息

Suresh S, Padmanabhan S, Vijayan M

机构信息

Molecular Biophysics Unit, Indian Institute of Science, Bangalore.

出版信息

J Biomol Struct Dyn. 1994 Jun;11(6):1425-35. doi: 10.1080/07391102.1994.10508077.

DOI:10.1080/07391102.1994.10508077
PMID:7946083
Abstract

The crystal structures of DL-arginine dihydrate, DL-arginine formate dihydrate and L-arginine formate have been determined and refined using X-ray crystallographic techniques. The three structures, along with other related ones, demonstrate the conformational variability of arginine. The amino acid molecules aggregate essentially in a similar manner in DL-arginine dihydrate and in the known structure of L-arginine dihydrate; the effects arising out of the reversal of the chirality of half the amino acid molecules are absorbed by small local adjustments. However, such a reversal leads to profound differences in aggregation in DL-arginine and L-arginine formates, in contrast to the situation in the corresponding acetates. Thus the effect of chirality on biomolecular aggregation cannot be easily predicted or even rationalized. Arginine-carboxylate interactions in the complexes primarily involve the guanidyl groups and contain specific interactions. Indeed the primary mode of arginine-carboxylic acid aggregation is substantially invariant in the arginine complexes of succinic, acetic and formic acids.

摘要

已使用X射线晶体学技术测定并精修了DL-精氨酸二水合物、DL-精氨酸甲酸盐二水合物和L-精氨酸甲酸盐的晶体结构。这三种结构以及其他相关结构展示了精氨酸的构象变异性。在DL-精氨酸二水合物和已知的L-精氨酸二水合物结构中,氨基酸分子基本上以相似的方式聚集;一半氨基酸分子手性反转所产生的影响通过局部小调整得以吸收。然而,与相应乙酸盐的情况相反,这种反转导致DL-精氨酸和L-精氨酸甲酸盐在聚集中存在深刻差异。因此,手性对生物分子聚集的影响不易预测,甚至难以合理化。配合物中的精氨酸-羧酸盐相互作用主要涉及胍基并包含特定相互作用。实际上,在琥珀酸、乙酸和甲酸的精氨酸配合物中,精氨酸-羧酸聚集的主要模式基本不变。

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