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涉及氨基酸和肽的晶体复合物的X射线研究XXXIV. DL-和L-精氨酸马来酸复合物中的新型聚集模式、相互作用模式和手性效应

X-ray studies on crystalline complexes involving amino acids and peptides XXXIV. Novel mode of aggregation, interaction patterns and chiral effects in the maleic acid complexes of DL- and L- arginine.

作者信息

Ravishankar R, Chandra N R, Vijayan M

机构信息

Molecular Biophysics Unit, Indian Institute of Science, Bangalore.

出版信息

J Biomol Struct Dyn. 1998 Jun;15(6):1093-100. doi: 10.1080/07391102.1998.10509003.

DOI:10.1080/07391102.1998.10509003
PMID:9669554
Abstract

Amino acid - carboxylic acid complexes provide useful information in relation to molecular interactions in present day biological systems and to prebiotic self-organisation. The crystal structures of the complexes of maleic acid with DL- arginine (orthorhombic; Pca2(1); a=15.9829, b=5.4127, c=16.1885; R=0.0522 for 956 reflections) and L- arginine (triclinic; P1; a=5.2641, b=8.0388, c=9.7860, alpha=106.197, beta=97.275, gamma=101.64; R=0.039 for 1749 reflections) have been determined. The complexes are made up of positively charged zwitterionic arginine molecules and negatively charged semi-maleate ions which contain an intramolecular symmetric O-H-O hydrogen bond. In both the structures, the amino acid molecules aggregate into layers. In each layer, S2 head-to-tail sequences are interconnected through specific intermolecular interactions between alpha-carboxylate and guanidyl groups, an arrangement observed for the first time in crystal structures involving arginine. The carboxylate-guanidyl interactions are of different types in the two complexes and consequently aggregation patterns in them exhibit substantial differences. Interactions between the amino acid layers involve the semi-maleate ions in both the complexes. In addition, water-bridges also exist in the L complex. The full potential of the guanidyl group for specific interactions is realized in both the structures. The L complex contains an array of water-mediated salt bridges. The structures demonstrate that the effect of chirality on molecular aggregation can span a wide range.

摘要

氨基酸 - 羧酸络合物为当今生物系统中的分子相互作用以及益生元前的自组织提供了有用信息。已确定马来酸与DL - 精氨酸(正交晶系;Pca2(1);a = 15.9829,b = 5.4127,c = 16.1885;956个反射的R = 0.0522)和L - 精氨酸(三斜晶系;P1;a = 5.2641,b = 8.0388,c = 9.7860,α = 106.197,β = 97.275,γ = 101.64;1749个反射的R = 0.039)形成的络合物的晶体结构。这些络合物由带正电荷的两性离子精氨酸分子和带负电荷的半马来酸根离子组成,半马来酸根离子含有分子内对称的O - H - O氢键。在这两种结构中,氨基酸分子聚集成层。在每一层中,S2头对尾序列通过α - 羧酸盐和胍基之间的特定分子间相互作用相互连接,这种排列在涉及精氨酸的晶体结构中首次观察到。两种络合物中羧酸盐 - 胍基相互作用的类型不同,因此它们的聚集模式存在显著差异。两种络合物中氨基酸层之间的相互作用都涉及半马来酸根离子。此外,L络合物中还存在水桥。在这两种结构中胍基进行特定相互作用的全部潜力都得以实现。L络合物包含一系列水介导的盐桥。这些结构表明手性对分子聚集的影响范围很广。

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