Uchino Masataka, Shida Osamu, Uchimura Tai, Komagata Kazuo
Laboratory of General and Applied Microbiology, Department of Applied Biology and Chemistry, Faculty of Applied Bioscience, Tokyo University of Agriculture, Setagaya-ku, Tokyo 156-8502, Japan.
J Gen Appl Microbiol. 2001 Oct;47(5):247-261. doi: 10.2323/jgam.47.247.
Seven Pseudomonas fulva strains obtained from culture collections were taxonomically studied. The seven strains were separated into three clusters (Clusters I to III) on the basis of 16S rRNA gene sequences, and located phylogenetically in the genus Pseudomonas sensu stricto. Further, the strains were classified into 4 groups (Groups I to IV) on the basis of DNA-DNA similarity. As a result, Cluster I was split into Groups I and II. Group I included the type strain of P. fulva and two strains, and levels of DNA-DNA similarity ranged from 88 to 100% among the strains. Group II contained two strains, and the level between the two strains ranged from 91 to 100%. Group III consisted of one strain. Group IV included one strain, and this strain showed a high level of DNA-DNA similarity with the type strain of Pseudomonas straminea NRIC 0164(T). Clusters II and III corresponded to Groups III and IV, respectively. The four groups were separated from one another and from related Pseudomonas species at the level from 3 to 45% of DNA-DNA similarity. The strains of Groups I, II, and III had ubiquinone 9 as the major quinone. According to numerical analysis by the use of 133 phenotypic characteristics, the seven P. fulva strains were split into four phenons (Phenons I to IV). The groups by DNA-DNA similarity corresponded well with the phenons produced by numerical taxonomy, and differential characteristics were recognized. Consequently, Group I was regarded as P. fulva because the type strain (NRIC 0180(T)) of this species was included in this group. Strains in Group II were identified as a new species, Pseudomonas parafulva sp. nov., and the type strain is AJ 2129 (=IFO 16636=JCM 11244=NRIC 0501). NRIC 0181 in Group III was identified as a new species, Pseudomonas cremoricolorata sp. nov., and the type strain is NRIC 0181 (=IFO 16634=JCM 11246). NRIC 0182 in Group IV was identified as P. straminea on the basis of the high level of DNA-DNA similarity with the type strain of this species.
对从菌种保藏中心获得的7株黄褐假单胞菌菌株进行了分类学研究。基于16S rRNA基因序列,这7株菌株被分为三个簇(簇I至簇III),并在系统发育上位于狭义假单胞菌属中。此外,根据DNA-DNA相似性,这些菌株被分为4个组(组I至组IV)。结果,簇I被分为组I和组II。组I包括黄褐假单胞菌的模式菌株和另外两株菌株,这些菌株之间的DNA-DNA相似性水平在88%至100%之间。组II包含两株菌株,这两株菌株之间的相似性水平在91%至100%之间。组III由一株菌株组成。组IV包括一株菌株,该菌株与稻草假单胞菌NRIC 0164(T)的模式菌株显示出高水平的DNA-DNA相似性。簇II和簇III分别对应于组III和组IV。这四个组彼此之间以及与相关假单胞菌物种在DNA-DNA相似性水平为3%至45%时相互分离。组I、组II和组III的菌株以泛醌9作为主要醌。根据利用133个表型特征进行的数值分析,7株黄褐假单胞菌菌株被分为四个表型群(表型群I至表型群IV)。基于DNA-DNA相似性的组与数值分类法产生的表型群很好地对应,并且识别出了鉴别特征。因此,组I被视为黄褐假单胞菌,因为该物种的模式菌株(NRIC 0180(T))包含在该组中。组II中的菌株被鉴定为一个新物种,即副黄褐假单胞菌(Pseudomonas parafulva sp. nov.),模式菌株是AJ 2129(=IFO 16636=JCM 11244=NRIC 0501)。组III中的NRIC 0181被鉴定为一个新物种,即奶油色假单胞菌(Pseudomonas cremoricolorata sp. nov.),模式菌株是NRIC 0181(=IFO 16634=JCM 11246)。基于与该物种模式菌株的高水平DNA-DNA相似性,组IV中的NRIC 0182被鉴定为稻草假单胞菌。