• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

抗衡离子凝聚理论的扩展。I. 另类几何结构与有限盐浓度

Extensions of counterion condensation theory. I. Alternative geometries and finite salt concentration.

作者信息

Schurr J Michael, Fujimoto Bryant S

机构信息

Department of Chemistry, University of Washington, PO Box 351700, Seattle, WA 98195-1700, USA.

出版信息

Biophys Chem. 2002 Dec 10;101-102:425-45. doi: 10.1016/s0301-4622(02)00178-3.

DOI:10.1016/s0301-4622(02)00178-3
PMID:12488018
Abstract

The counterion condensation theory originally proposed by Manning is extended to take account of both finite counterion concentration (m(C)) and the actual structure of the array of discrete changes. Counterion condensation is treated here as a binding isotherm problem, in which the unknown free volume is replaced by an unknown local binding constant beta', which is expected to vary with m(C) and polyion structure. The relation between the condensed fraction of counterion charge, r, beta' and m(C) is obtained from the relevant grand partition function via the maximum term method. In the case of the single polyion in a large salt reservoir, the result is practically identical to Manning's equation. In order to determine the values of beta' and r at arbitrary m(C), a second relation between r, beta' and m(C) is required. We propose an alternative auxiliary relation that is equivalent to previous assumptions near m(C) = 0, but which yields qualitatively correct and quantitatively useful results at finite m(C). Simple expressions for r vs. m(C) and beta' vs. m(C) are obtained by simultaneously solving the binding isotherm and auxiliary equations. Then r and beta' are evaluated for five different linear arrays of infinite extent with different geometries: (1) a straight line of charges with uniform axial spacing; (2) two parallel lines of in-phase uniformly spaced charges; (3) a single-helix of discrete charges with uniform axial spacing; (4) a double-helix of discrete charges with uniform axial spacing of pairs of charges; (5) a cylindrical array of many parallel charged lines, chosen to simulate a uniformly charged cylinder. In all cases, the computed binding isotherms exhibit qualitatively correct behavior. As m(C) approaches zero, r approaches the Manning limit, r = 1-1/(L(B)/b) where b is the average axial spacing of electronic charges in the array and L(B) is the Bjerrum length. However, beta' varies with polyion geometry, even in the zero salt limit, and matches the Manning value only in the case of a single straight charged line. With increasing m(C), r declines significantly below its limiting value whenever lambda(b) > or approximately equal 0.3, where lambda is the Debye screening parameter. In the case of cylindrical arrays containing either 2 or 100 parallel charged lines, r also decreases, whenever lambda(d) > or approximately equal 2.0, where d is the diameter of the array. In the case of two parallel charged lines, each with axial charge spacing b=3.4 A, which are separated by d = 200 A, r exhibits a plateau value, 0.76, characteristic of the two combined lines, when lambda(d)<<2.0, and declines with increasing m(C) to a shelf value, 0.52, characteristic of either single line, when lambda(d) > or approximately equal 2.0 and the lines become effectively screened from one another. beta' behaves in a roughly similar fashion. In the case of a cylindrical array of charged lines with the diameter and linear charge density of DNA, the r-values predicted by the present theory agree fairly well with those predicted by non-linear Poisson-Boltzmann theory up to 0.15 M uni-univalent salt.

摘要

最初由曼宁提出的抗衡离子凝聚理论得到了扩展,以兼顾有限的抗衡离子浓度(m(C))和离散电荷阵列的实际结构。在此,抗衡离子凝聚被视为一个结合等温线问题,其中未知的自由体积被一个未知的局部结合常数β'所取代,预计该常数会随m(C)和聚离子结构而变化。抗衡离子电荷的凝聚分数r、β'与m(C)之间的关系是通过最大项法从相关的巨配分函数中得出的。在大盐库中单个聚离子的情况下,结果实际上与曼宁方程相同。为了确定任意m(C)下的β'和r值,需要r、β'与m(C)之间的第二个关系。我们提出了一种替代的辅助关系,它在m(C) = 0附近与先前的假设等效,但在有限的m(C)下能产生定性正确且定量有用的结果。通过同时求解结合等温线方程和辅助方程,得到了r与m(C)以及β'与m(C)的简单表达式。然后,针对具有不同几何形状的五种不同无限长线性阵列评估r和β':(1)具有均匀轴向间距的直线电荷;(2)两条同相均匀间隔电荷的平行线;(3)具有均匀轴向间距的离散电荷单螺旋;(4)具有电荷对均匀轴向间距的离散电荷双螺旋;(5)许多平行带电直线的圆柱阵列,用于模拟均匀带电圆柱体。在所有情况下,计算得到的结合等温线都表现出定性正确的行为。当m(C)趋近于零时,r趋近于曼宁极限,r = 1 - 1/(L(B)/b),其中b是阵列中电子电荷的平均轴向间距,L(B)是 Bjerrum 长度。然而,β'随聚离子几何形状而变化,即使在零盐极限情况下也是如此,并且仅在单个直线带电的情况下与曼宁值匹配。随着m(C)的增加,只要λ(b) > 或近似等于0.3,r就会显著下降到其极限值以下,其中λ是德拜屏蔽参数。在包含2条或100条平行带电直线的圆柱阵列情况下,只要λ(d) > 或近似等于2.0,r也会减小,其中d是阵列的直径。在两条平行带电直线的情况下,每条直线的轴向电荷间距b = 3.4 Å,它们之间的间距d = 200 Å,当λ(d) << 2.0时,r呈现出一个平台值0.76,这是两条组合直线的特征,而当λ(d) > 或近似等于2.0且两条直线彼此有效屏蔽时,r会随着m(C)的增加下降到一个稳定值0.52,这是任何一条单直线的特征。β'的行为大致相似。在具有DNA直径和线性电荷密度的带电直线圆柱阵列情况下,本理论预测的r值与非线性泊松 - 玻尔兹曼理论预测的值在高达0.15 M的单价单盐情况下相当吻合。

相似文献

1
Extensions of counterion condensation theory. I. Alternative geometries and finite salt concentration.抗衡离子凝聚理论的扩展。I. 另类几何结构与有限盐浓度
Biophys Chem. 2002 Dec 10;101-102:425-45. doi: 10.1016/s0301-4622(02)00178-3.
2
Approach to the limit of counterion condensation.抗衡离子凝聚极限的研究方法。
Biopolymers. 1990;30(13-14):1191-203. doi: 10.1002/bip.360301305.
3
Counterion condensation theory for finite polyelectrolyte and salt concentrations.有限聚电解质和盐浓度的抗衡离子凝聚理论。
J Phys Condens Matter. 2022 Jun 29;34(35). doi: 10.1088/1361-648X/ac792e.
4
Electrostatic correlations in inhomogeneous charged fluids beyond loop expansion.非均匀带电流体中环扩张之外的静电关联。
J Chem Phys. 2012 Sep 14;137(10):104902. doi: 10.1063/1.4750044.
5
Evaluation of the counterion condensation theory of polyelectrolytes.聚电解质的抗衡离子凝聚理论评估
Biophys J. 1995 Aug;69(2):380-8. doi: 10.1016/S0006-3495(95)79910-6.
6
Counter-ion condensation and system dimensionality.抗衡离子凝聚与体系维度
J Biomol Struct Dyn. 1983 Oct;1(2):461-71. doi: 10.1080/07391102.1983.10507455.
7
Counterion condensation and shape within Poisson-Boltzmann theory.反离子凝聚和泊松-玻尔兹曼理论中的形状。
Biopolymers. 2010 Jul;93(7):619-39. doi: 10.1002/bip.21421.
8
Electrostatic free energy of the DNA double helix in counterion condensation theory.反离子凝聚理论中DNA双螺旋的静电自由能
Biophys Chem. 2002 Dec 10;101-102:461-73. doi: 10.1016/s0301-4622(02)00162-x.
9
Variational charge renormalization in charged systems.带电系统中的变分电荷重整化
Eur Phys J E Soft Matter. 2003 Jul;11(3):301-311. doi: 10.1140/epje/i2002-10159-0.
10
Dressed polyions, counterion condensation, and adsorption excess in polyelectrolyte solutions.聚电解质溶液中的着装聚离子、抗衡离子凝聚和吸附过量
Proc Natl Acad Sci U S A. 1996 Apr 30;93(9):4342-4. doi: 10.1073/pnas.93.9.4342.

引用本文的文献

1
BIOPHYSICAL PROPERTIES OF NUCLEIC ACIDS AT SURFACES RELEVANT TO MICROARRAY PERFORMANCE.与微阵列性能相关的表面核酸的生物物理特性
Biomater Sci. 2014 Apr 1;2(4):436-471. doi: 10.1039/C3BM60181A.
2
Revisiting the association of cationic groove-binding drugs to DNA using a Poisson-Boltzmann approach.重新审视使用泊松-玻尔兹曼方法研究阳离子沟结合药物与 DNA 的相互作用。
Biophys J. 2010 Aug 4;99(3):879-86. doi: 10.1016/j.bpj.2010.04.066.
3
DNA curvature and flexibility in vitro and in vivo.体外和体内的 DNA 弯曲和柔韧性。
Q Rev Biophys. 2010 Feb;43(1):23-63. doi: 10.1017/S0033583510000077. Epub 2010 May 18.
4
DNA on a tube: electrostatic contribution to stiffness.管上的DNA:静电对刚度的贡献。
J Phys Chem B. 2008 Dec 18;112(50):16163-9. doi: 10.1021/jp806260h.
5
Mechanistic differences in DNA nanoparticle formation in the presence of oligolysines and poly-L-lysine.在存在寡聚赖氨酸和聚-L-赖氨酸的情况下DNA纳米颗粒形成的机制差异
Biomacromolecules. 2007 Feb;8(2):477-84. doi: 10.1021/bm0605863.