一个用于组装基因组数据注释的可扩展应用程序。

An extensible application for assembling annotation for genomic data.

作者信息

Zhang Jianhua, Carey Vincent, Gentleman Robert

机构信息

Department of Biostatistical Science, Dana-Farber Cancer Institute, Harvard School of Public Health, and Channing Laboratory, Boston, MA, USA.

出版信息

Bioinformatics. 2003 Jan;19(1):155-6. doi: 10.1093/bioinformatics/19.1.155.

DOI:10.1093/bioinformatics/19.1.155

PMID:12499308

Abstract

SUMMARY

AnnBuilder is an R package for assembling genomic annotation data. The system currently provides parsers to process annotation data from LocusLink, Gene Ontology Consortium, and Human Gene Project and can be extended to new data sources via user defined parsers. AnnBuilder differs from other existing systems in that it provides users with unlimited ability to assemble data from user selected sources. The products of AnnBuilder are files in XML format that can be easily used by different systems.

AVAILABILITY

(http://www.bioconductor.org). Open source.

摘要

AnnBuilder是一个用于组装基因组注释数据的R包。该系统目前提供解析器来处理来自LocusLink、基因本体联合会和人类基因项目的注释数据，并且可以通过用户定义的解析器扩展到新的数据源。AnnBuilder与其他现有系统的不同之处在于，它为用户提供了从用户选择的源组装数据的无限能力。AnnBuilder的产品是XML格式的文件，可被不同系统轻松使用。