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最小发夹状核酶全RNA U39C突变体的结晶及X射线衍射分析

Crystallization and X-ray diffraction analysis of an all-RNA U39C mutant of the minimal hairpin ribozyme.

作者信息

Grum-Tokars Valerie, Milovanovic Michael, Wedekind Joseph E

机构信息

The Department of Biochemistry and Molecular Biology, FUHS/The Chicago Medical School, 3333 Green Bay Road, North Chicago, Illinois 60064, USA.

出版信息

Acta Crystallogr D Biol Crystallogr. 2003 Jan;59(Pt 1):142-5. doi: 10.1107/s0907444902019066. Epub 2002 Dec 19.

DOI:10.1107/s0907444902019066
PMID:12499551
Abstract

The hairpin ribozyme is a naturally occurring catalytic RNA composed of two helix-loop-helix domains, A and B, that dock to form the biologically active enzyme. Previously, the crystal structure of the hairpin has been solved as a four-way helical junction that incorporated the U1A protein as an artificial crystal-packing motif [Rupert & Ferré-D'Amaré (2001), Nature (London), 410, 780-786]. Here, the crystallization of a minimal junctionless hairpin ribozyme 64-mer is reported in the absence of protein. Crystals grow in space group P6(1)22, with unit-cell parameters a = 93.1, c = 123.2 A. Complete diffraction data have been collected to 3.35 A resolution. Structural analysis should provide details of intermolecular RNA docking, including the ground-state conformations of the U(39)C mutation relevant to hairpin catalysis.

摘要

发夹状核酶是一种天然存在的催化RNA,由两个螺旋-环-螺旋结构域A和B组成,它们对接形成具有生物活性的酶。此前,发夹状核酶的晶体结构已被解析为一种四链螺旋连接体,其中包含U1A蛋白作为人工晶体堆积基序[鲁珀特和费雷-达马雷(2001年),《自然》(伦敦),410,780 - 786]。在此,报道了在无蛋白质情况下最小的无连接头发夹状核酶64聚体的结晶情况。晶体在空间群P6(1)22中生长,晶胞参数a = 93.1,c = 123.2 Å。已收集到分辨率为3.35 Å的完整衍射数据。结构分析应能提供分子间RNA对接的详细信息,包括与发夹状核酶催化相关的U(39)C突变的基态构象。

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Crystallization and X-ray diffraction analysis of an all-RNA U39C mutant of the minimal hairpin ribozyme.最小发夹状核酶全RNA U39C突变体的结晶及X射线衍射分析
Acta Crystallogr D Biol Crystallogr. 2003 Jan;59(Pt 1):142-5. doi: 10.1107/s0907444902019066. Epub 2002 Dec 19.
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Do the hairpin and VS ribozymes share a common catalytic mechanism based on general acid-base catalysis? A critical assessment of available experimental data.发夹和 VSR 核酶是否基于通用酸碱催化共享共同的催化机制?对现有实验数据的批判性评估。
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