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基于piggyBac的插入诱变和增强子检测作为功能性昆虫基因组学的工具

piggyBac-based insertional mutagenesis and enhancer detection as a tool for functional insect genomics.

作者信息

Horn Carsten, Offen Nils, Nystedt Sverker, Häcker Udo, Wimmer Ernst A

机构信息

Lehrstuhl für Genetik, Universität Bayreuth, 95447 Bayreuth, Germany.

出版信息

Genetics. 2003 Feb;163(2):647-61. doi: 10.1093/genetics/163.2.647.

Abstract

Transposon mutagenesis provides a fundamental tool for functional genomics. Here we present a non-species-specific, combined enhancer detection and binary expression system based on the transposable element piggyBac: For the different components of this insertional mutagenesis system, we used widely applicable transposons and distinguishable broad-range transformation markers, which should enable this system to be operational in nonmodel arthropods. In a pilot screen in Drosophila melanogaster, piggyBac mutator elements on the X chromosome were mobilized in males by a Hermes-based jumpstarter element providing piggyBac transposase activity under control of the alpha1-tubulin promoter. As primary reporters in the piggyBac mutator elements, we employed the heterologous transactivators GAL4delta or tTA. To identify larval and adult enhancer detectors, strains carrying UASp-EYFP or TRE-EYFP as secondary reporter elements were used. Tissue-specific enhancer activities were readily observed in the GAL4delta/UASp-based systems, but only rarely in the tTA/TRE system. Novel autosomal insertions were recovered with an average jumping rate of 80%. Of these novel insertions, 3.8% showed homozygous lethality, which was reversible by piggyBac excision. Insertions were found in both coding and noncoding regions of characterized genes and also in noncharacterized and non-P-targeted CG-number genes. This indicates that piggyBac will greatly facilitate the intended saturation mutagenesis in Drosophila.

摘要

转座子诱变是功能基因组学的一项基本工具。在此,我们基于转座元件piggyBac提出了一种非物种特异性的、结合增强子检测和二元表达的系统:对于这个插入诱变系统的不同组件,我们使用了广泛适用的转座子和可区分的广谱转化标记,这应能使该系统在非模式节肢动物中发挥作用。在黑腹果蝇的初步筛选中,通过基于Hermes的启动元件在雄性果蝇中激活X染色体上的piggyBac诱变元件,该启动元件在α1 -微管蛋白启动子的控制下提供piggyBac转座酶活性。作为piggyBac诱变元件中的主要报告基因,我们采用了异源反式激活因子GAL4delta或tTA。为了鉴定幼虫和成虫增强子检测元件,使用了携带UASp - EYFP或TRE - EYFP作为二级报告基因元件的菌株。在基于GAL4delta/UASp的系统中很容易观察到组织特异性增强子活性,但在tTA/TRE系统中很少观察到。回收的新常染色体插入片段的平均跳跃率为80%。在这些新插入片段中,3.8%表现出纯合致死性,可通过piggyBac切除逆转。插入发生在已鉴定基因的编码区和非编码区,也发生在未鉴定的和非P靶向的CG编号基因中。这表明piggyBac将极大地促进黑腹果蝇中预期的饱和诱变。

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