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节杆菌属菌株SU中4-羟基苯甲酰辅酶A硫酯酶的结构

The structure of 4-hydroxybenzoyl-CoA thioesterase from arthrobacter sp. strain SU.

作者信息

Thoden James B, Zhuang Zhihao, Dunaway-Mariano Debra, Holden Hazel M

机构信息

Department of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706-1544, USA.

出版信息

J Biol Chem. 2003 Oct 31;278(44):43709-16. doi: 10.1074/jbc.M308198200. Epub 2003 Aug 7.

Abstract

The 4-chlorobenzoyl-CoA dehalogenation pathway in certain Arthrobacter and Pseudomonas bacterial species contains three enzymes: a ligase, a dehalogenase, and a thioesterase. Here we describe the high resolution x-ray crystallographic structure of the 4-hydroxybenzoyl-CoA thioesterase from Arthrobacter sp. strain SU. The tetrameric enzyme is a dimer of dimers with each subunit adopting the so-called "hot dog fold" composed of six strands of anti-parallel beta-sheet flanked on one side by a rather long alpha-helix. The dimers come together to form the tetramer with their alpha-helices facing outwards. This quaternary structure is in sharp contrast to that previously observed for the 4-hydroxybenzoyl-CoA thioesterase from Pseudomonas species strain CBS-3, whereby the dimers forming the tetramer pack with their alpha-helices projecting toward the interfacial region. In the Arthrobacter thioesterase, each of the four active sites is formed by three of the subunits of the tetramer. On the basis of both structural and kinetic data, it appears that Glu73 is the active site base in the Arthrobacter thioesterase. Remarkably, this residue is located on the opposite side of the substrate-binding pocket compared with that observed for the Pseudomonas enzyme. Although these two bacterial thioesterases demonstrate equivalent catalytic efficiencies, substrate specificities, and metabolic functions, their quaternary structures, CoA-binding sites, and catalytic platforms are decidedly different.

摘要

某些节杆菌属和假单胞菌属细菌物种中的4-氯苯甲酰辅酶A脱卤途径包含三种酶:连接酶、脱卤酶和硫酯酶。在此,我们描述了节杆菌属菌株SU中4-羟基苯甲酰辅酶A硫酯酶的高分辨率X射线晶体结构。该四聚体酶是由两个二聚体组成的二聚体,每个亚基采用所谓的“热狗折叠”结构,由六条反平行β折叠链组成,一侧有一条相当长的α螺旋。二聚体聚集形成四聚体,其α螺旋向外。这种四级结构与之前观察到的假单胞菌属菌株CBS-3中的4-羟基苯甲酰辅酶A硫酯酶的结构形成鲜明对比,在该结构中,形成四聚体的二聚体以其α螺旋朝向界面区域堆积。在节杆菌硫酯酶中,四个活性位点中的每一个都由四聚体的三个亚基形成。基于结构和动力学数据,似乎Glu73是节杆菌硫酯酶中的活性位点碱基。值得注意的是,与假单胞菌酶相比,该残基位于底物结合口袋的另一侧。尽管这两种细菌硫酯酶表现出相当的催化效率、底物特异性和代谢功能,但它们的四级结构、辅酶A结合位点和催化平台明显不同。

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