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铜绿假单胞菌凝集素LecB识别碳水化合物的结构基础。

Structural basis of carbohydrate recognition by the lectin LecB from Pseudomonas aeruginosa.

作者信息

Loris Remy, Tielker Denis, Jaeger Karl-Erich, Wyns Lode

机构信息

Vrije Universiteit Brussel, Laboratorium voor Ultrastructuur Instituut voor Moleculaire Biologie, Gebouw E, Pleinlaan 2, B-1050 Brussel, Belgium.

出版信息

J Mol Biol. 2003 Aug 22;331(4):861-70. doi: 10.1016/s0022-2836(03)00754-x.

Abstract

The crystal structure of Pseudomonas aeruginosa fucose-specific lectin LecB was determined in its metal-bound and metal-free state as well as in complex with fucose, mannose and fructopyranose. All three monosaccharides bind isosterically via direct interactions with two calcium ions as well as direct hydrogen bonds with several side-chains. The higher affinity for fucose is explained by the details of the binding site around C6 and O1 of fucose. In the mannose and fructose complexes, a carboxylate oxygen atom and one or two hydroxyl groups are partly shielded from solvent upon sugar binding, preventing them from completely fulfilling their hydrogen bonding potential. In the fucose complex, no such defects are observed. Instead, C6 makes favourable interactions with a small hydrophobic patch. Upon demetallization, the C terminus as well as the otherwise rigid metal-binding loop become more mobile and adopt multiple conformations.

摘要

测定了铜绿假单胞菌岩藻糖特异性凝集素LecB在其结合金属和无金属状态下以及与岩藻糖、甘露糖和吡喃果糖形成复合物时的晶体结构。所有三种单糖通过与两个钙离子的直接相互作用以及与几个侧链的直接氢键以等排方式结合。岩藻糖具有更高的亲和力,这可以通过岩藻糖C6和O1周围结合位点的细节来解释。在甘露糖和果糖复合物中,一个羧酸根氧原子和一个或两个羟基在糖结合时部分被溶剂屏蔽,阻止它们完全发挥其氢键潜力。在岩藻糖复合物中,未观察到此类缺陷。相反,C6与一个小的疏水区域形成有利的相互作用。去金属化后,C末端以及原本刚性的金属结合环变得更加灵活,并呈现多种构象。

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