Life Sciences Group, Institut Laue-Langevin, 71 Avenue des Martyrs, 38000, Grenoble, France.
Partnership for Structural Biology (PSB), 71 Avenue des Martyrs, 38000, Grenoble, France.
Nat Commun. 2022 Jan 11;13(1):194. doi: 10.1038/s41467-021-27871-8.
The opportunistic pathogen Pseudomonas aeruginosa, a major cause of nosocomial infections, uses carbohydrate-binding proteins (lectins) as part of its binding to host cells. The fucose-binding lectin, LecB, displays a unique carbohydrate-binding site that incorporates two closely located calcium ions bridging between the ligand and protein, providing specificity and unusually high affinity. Here, we investigate the mechanisms involved in binding based on neutron crystallography studies of a fully deuterated LecB/fucose/calcium complex. The neutron structure, which includes the positions of all the hydrogen atoms, reveals that the high affinity of binding may be related to the occurrence of a low-barrier hydrogen bond induced by the proximity of the two calcium ions, the presence of coordination rings between the sugar, calcium and LecB, and the dynamic behaviour of bridging water molecules at room temperature. These key structural details may assist in the design of anti-adhesive compounds to combat multi-resistance bacterial infections.
机会性病原体铜绿假单胞菌是医院感染的主要原因之一,它将碳水化合物结合蛋白(凝集素)作为其与宿主细胞结合的一部分。岩藻糖结合凝集素 LecB 具有独特的碳水化合物结合位点,其中包含两个紧密相邻的钙离子,在配体和蛋白质之间形成桥接,从而提供特异性和异常高的亲和力。在这里,我们基于对完全氘化 LecB/岩藻糖/钙复合物的中子晶体学研究,研究了结合涉及的机制。该中子结构包括所有氢原子的位置,揭示了结合的高亲和力可能与两个钙离子的接近引起的低势垒氢键的发生、糖、钙和 LecB 之间的配位环的存在以及室温下桥接水分子的动态行为有关。这些关键的结构细节可能有助于设计抗粘附化合物来对抗多耐药细菌感染。