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紫色色杆菌凝集素CV-IIL对岩藻糖和甘露糖的异常熵驱动亲和力。

Unusual entropy-driven affinity of Chromobacterium violaceum lectin CV-IIL toward fucose and mannose.

作者信息

Pokorná Martina, Cioci Gianluca, Perret Stephanie, Rebuffet Etienne, Kostlánová Nikola, Adam Jan, Gilboa-Garber Nechama, Mitchell Edward P, Imberty Anne, Wimmerová Michaela

机构信息

National Centre for Biomolecular Research and Department of Biochemistry, Faculty of Science, Masaryk University, Kotlarska 2, 611 37 Brno, Czech Republic.

出版信息

Biochemistry. 2006 Jun 20;45(24):7501-10. doi: 10.1021/bi060214e.

Abstract

The purple pigmented bacterium Chromobacterium violaceum is a dominant component of tropical soil microbiota that can cause rare but fatal septicaemia in humans. Its sequenced genome provides insight into the abundant potential of this organism for biotechnological and pharmaceutical applications and allowed an ORF encoding a protein that is 60% identical to the fucose binding lectin (PA-IIL) from Pseudomonas aeruginosa and the mannose binding lectin (RS-IIL) from Ralstonia solanacearum to be identified. The lectin, CV-IIL, has recently been purified from C. violaceum [Zinger-Yosovich, K., Sudakevitz, D., Imberty, A., Garber, N. C., and Gilboa-Garber, N. (2006) Microbiology 152, 457-463] and has been confirmed to be a tetramer with subunit size of 11.86 kDa and a binding preference for fucose. We describe here the cloning of CV-IIL and its expression as a recombinant protein. A complete structure-function characterization has been made in an effort to analyze the specificity and affinity of CV-IIL for fucose and mannose. Crystal structures of CV-IIL complexes with monosaccharides have yielded the molecular basis of the specificity. Each monomer contains two close calcium cations that mediate the binding of the monosaccharides, which occurs in different orientations for fucose and mannose. The thermodynamics of binding has been analyzed by titration microcalorimetry, giving dissociation constants of 1.7 and 19 microM for alpha-methyl fucoside and alpha-methyl mannoside, respectively. Further analysis demonstrated a strongly favorable entropy term that is unusual in carbohydrate binding. A comparison with both PA-IIL and RS-IIL, which have binding preferences for fucose and mannose, respectively, yielded insights into the monosaccharide specificity of this important class of soluble bacterial lectins.

摘要

紫色色素细菌紫色色杆菌是热带土壤微生物群的主要成分,可导致人类罕见但致命的败血症。其测序基因组有助于深入了解该生物体在生物技术和制药应用方面的巨大潜力,并使得一个编码与铜绿假单胞菌的岩藻糖结合凝集素(PA-IIL)以及青枯雷尔氏菌的甘露糖结合凝集素(RS-IIL)有60%同源性的蛋白质的开放阅读框得以鉴定。这种凝集素CV-IIL最近已从紫色色杆菌中纯化出来[津格-约索维奇,K.,苏达凯维茨,D.,安贝尔蒂,A.,加伯,N.C.,以及吉尔博亚-加伯,N.(2006年)《微生物学》152卷,457 - 463页],并已证实是一种四聚体,亚基大小为11.86 kDa,对岩藻糖有结合偏好。我们在此描述CV-IIL的克隆及其作为重组蛋白的表达。为了分析CV-IIL对岩藻糖和甘露糖的特异性及亲和力,已进行了完整的结构 - 功能表征。CV-IIL与单糖复合物的晶体结构揭示了特异性的分子基础。每个单体含有两个紧密的钙阳离子,它们介导单糖的结合,岩藻糖和甘露糖的结合方向不同。通过滴定微量热法分析了结合的热力学,得出α - 甲基岩藻糖苷和α - 甲基甘露糖苷的解离常数分别为1.7和19 μM。进一步分析表明存在一个非常有利的熵项,这在碳水化合物结合中并不常见。与分别对岩藻糖和甘露糖有结合偏好的PA-IIL和RS-IIL进行比较,有助于深入了解这类重要的可溶性细菌凝集素的单糖特异性。

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