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溶组织内阿米巴染色体外环状核糖体DNA:高变区克隆变异分析

Entamoeba histolytica extrachromosomal circular ribosomal DNA: analysis of clonal variation in a hypervariable region.

作者信息

Bhattacharya S, Bhattacharya A, Diamond L S

机构信息

Laboratory of Parasitic Diseases, National Institutes of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 20892.

出版信息

Exp Parasitol. 1992 Mar;74(2):200-4. doi: 10.1016/0014-4894(92)90047-e.

DOI:10.1016/0014-4894(92)90047-e
PMID:1346767
Abstract

The ribosomal RNA genes of the protozoan parasite Entamoeba histolytica are highly repeated and display restriction fragment length polymorphism. Using a set of four DNA probes spanning the coding region and part of the flanking region of the E. histolytica ribosomal RNA genes, an analysis of the DNA bands generated by EcoRI digestion of Entamoeba DNA is presented. This analysis included five strains of E. histolytica, four strains of E. moshkovskii, and one strain each of E. invadens and E. terrapinae. No common bands were observed between E. histolytica and the other Entamoeba. Within E. histolytica, two bands were conserved in all strains while the others were polymorphic. Detailed analysis of DNA from independently isolated clones of the strain HM-1:IMSS of E. histolytica showed two bands to be highly polymorphic. Of these, the 4.4-kb band of clone 6 was further analyzed. Polymorphism in this band could even be demonstrated in cells of the same clone. Restriction enzyme analysis of this DNA band from two clones of HM-1:IMSS showed that the polymorphism may be due to variable numbers of DraI repeat units present in this DNA stretch.

摘要

原生动物寄生虫溶组织内阿米巴的核糖体RNA基因高度重复,并表现出限制性片段长度多态性。使用一组跨越溶组织内阿米巴核糖体RNA基因编码区和部分侧翼区的四种DNA探针,对溶组织内阿米巴DNA经EcoRI酶切产生的DNA条带进行了分析。该分析包括五株溶组织内阿米巴、四株莫斯科维茨内阿米巴以及一株侵袭内阿米巴和一株龟内阿米巴。在溶组织内阿米巴与其他内阿米巴之间未观察到共同条带。在溶组织内阿米巴内部,所有菌株中有两条带是保守的,而其他带则是多态性的。对溶组织内阿米巴菌株HM-1:IMSS独立分离克隆的DNA进行的详细分析表明,有两条带具有高度多态性。其中,对克隆6的4.4-kb条带进行了进一步分析。同一克隆的细胞中甚至也能显示出该条带的多态性。对来自HM-1:IMSS两个克隆的该DNA条带进行的限制性酶切分析表明,多态性可能是由于该DNA片段中存在数量可变的DraI重复单元。

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Entamoeba histolytica extrachromosomal circular ribosomal DNA: analysis of clonal variation in a hypervariable region.溶组织内阿米巴染色体外环状核糖体DNA:高变区克隆变异分析
Exp Parasitol. 1992 Mar;74(2):200-4. doi: 10.1016/0014-4894(92)90047-e.
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引用本文的文献

1
Identification of EhTIF-IA: The putative E. histolytica orthologue of the human ribosomal RNA transcription initiation factor-IA.溶组织内阿米巴TIF-IA的鉴定:人核糖体RNA转录起始因子-IA在溶组织内阿米巴中的假定同源物。
J Biosci. 2016 Mar;41(1):51-62. doi: 10.1007/s12038-016-9587-z.
2
Mutation detection analysis of a region of 16S-like ribosomal RNA gene of Entamoeba histolytica, Entamoeba dispar and Entamoeba moshkovskii.溶组织内阿米巴、迪斯帕内阿米巴和莫氏内阿米巴16S样核糖体RNA基因区域的突变检测分析
BMC Infect Dis. 2008 Sep 26;8:131. doi: 10.1186/1471-2334-8-131.
3
Patterns of evolution in the unique tRNA gene arrays of the genus Entamoeba.
内阿米巴属独特的tRNA基因阵列中的进化模式。
Mol Biol Evol. 2008 Jan;25(1):187-98. doi: 10.1093/molbev/msm238. Epub 2007 Nov 1.
4
Remarkable genetic polymorphism among Entamoeba histolytica isolates from a limited geographic area.来自有限地理区域的溶组织内阿米巴分离株之间存在显著的遗传多态性。
J Clin Microbiol. 2002 Nov;40(11):4081-90. doi: 10.1128/JCM.40.11.4081-4090.2002.
5
Isolation and characterization of polymorphic DNA from Entamoeba histolytica.溶组织内阿米巴多态性DNA的分离与鉴定。
J Clin Microbiol. 2001 Mar;39(3):897-905. doi: 10.1128/JCM.39.3.897-905.2001.
6
A variable DNA region of Entamoeba histolytica is expressed in several transcripts which differ in genetically related clones.溶组织内阿米巴的一个可变DNA区域在几个转录本中表达,这些转录本在基因相关的克隆中有所不同。
Mol Gen Genet. 1993 Nov;241(3-4):271-9. doi: 10.1007/BF00284678.