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利用AFLP衍生的SCAR标记缩小苹果抗黑星病Vf基因座的区域

Narrowing down the region of the Vf locus for scab resistance in apple using AFLP-derived SCARs.

作者信息

Huaracha E, Xu M, Korban S S

机构信息

Department of Natural Resources and Environmental Sciences, University of Illinois, 310 Madigan Building, 1201 West Gregory Drive, Urbana, IL 97331, USA.

出版信息

Theor Appl Genet. 2004 Jan;108(2):274-9. doi: 10.1007/s00122-003-1435-5. Epub 2003 Sep 6.

DOI:10.1007/s00122-003-1435-5
PMID:13679976
Abstract

A narrow-down strategy to restrict the Vf region, which controls resistance to the fungal disease apple scab in apple, to a genetic distance of 0.4 cM is presented. Using 11 AFLP-derived SCARs and three RAPD-derived SCARs, all linked to the Vf gene, we subjected 1,412 scab-resistant individuals from 16 mapping populations to genotype analysis. Eleven recombinant individuals were identified within a genetic distance of 0.9 cM around the Vf gene. Using these 11 recombinants, we achieved fine-resolution of several AFLP-derived SCAR markers surrounding the Vf gene, resulting in the following genetic linkage map: ACS-6 and ACS are located left of the Vf gene at genetic distances of 0.2 cM and 0.1 cM, respectively; ACS-7 and ACS-9 are inseparable from the Vf gene; ACS-8, ACS-10, and ACS-4 are located to the right of the Vf gene at genetic distances of 0.1 cM, 0.4 cM, and 0.5 cM, respectively; the remaining five SCARs-ACS-11, ACS-5, ACS-2, ACS-1, and AL07-are inseparable and are located right of the Vf gene at a genetic distance of 0.7 cM. By integrating this linkage data with our previous physical map, we generated a revised map of the narrowed-down region of Vf.

摘要

本文提出了一种将控制苹果对真菌病害苹果黑星病抗性的Vf区域限制在0.4厘摩遗传距离内的缩小策略。利用11个与Vf基因连锁的AFLP衍生SCAR标记和3个RAPD衍生SCAR标记,我们对来自16个作图群体的1412个抗黑星病个体进行了基因型分析。在Vf基因周围0.9厘摩的遗传距离内鉴定出11个重组个体。利用这11个重组体,我们对Vf基因周围的几个AFLP衍生SCAR标记进行了精细定位,得到了如下遗传连锁图谱:ACS-6和ACS分别位于Vf基因左侧,遗传距离为0.2厘摩和0.1厘摩;ACS-7和ACS-9与Vf基因不可分离;ACS-8、ACS-10和ACS-4分别位于Vf基因右侧,遗传距离为0.1厘摩、0.4厘摩和0.5厘摩;其余5个SCAR标记——ACS-11、ACS-5、ACS-2、ACS-1和AL07——不可分离,位于Vf基因右侧,遗传距离为0.7厘摩。通过将这些连锁数据与我们之前的物理图谱整合,我们生成了Vf缩小区域的修订图谱。

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本文引用的文献

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Screening apples for OPD20/600 using sequence-specific primers.使用序列特异性引物对 OPD20/600 进行苹果筛选。
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2
A detailed linkage map around an apple scab resistance gene demonstrates that two disease resistance classes both carry the V f gene.一个围绕苹果黑星病抗性基因的详细连锁图谱表明,两种抗病类型都携带 Vf 基因。
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AFLP-derived SCARs facilitate construction of a 1.1 Mb sequence-ready map of a region that spans the Vf locus in the apple genome.基于扩增片段长度多态性(AFLP)技术获得的序列特征性扩增区域(SCARs)有助于构建苹果基因组中跨越Vf基因座的一个区域的1.1 Mb序列就绪图谱。
Plant Mol Biol. 2002 Nov;50(4-5):803-18. doi: 10.1023/a:1019912419709.
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Development of sequence-characterized amplified regions (SCARs) from amplified fragment length polymorphism (AFLP) markers tightly linked to the Vf gene in apple.从与苹果Vf基因紧密连锁的扩增片段长度多态性(AFLP)标记开发序列特征化扩增区域(SCAR)。
Genome. 2001 Feb;44(1):63-70. doi: 10.1139/gen-44-1-63.
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