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基于16S rRNA序列构建弧菌属系统发育树

Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences.

作者信息

Dorsch M, Lane D, Stackebrandt E

机构信息

Department of Microbiology, University of Queensland, St. Lucia, Australia.

出版信息

Int J Syst Bacteriol. 1992 Jan;42(1):58-63. doi: 10.1099/00207713-42-1-58.

Abstract

The inter- and intrageneric relationships of the genus Vibrio were investigated by performing a comparative analysis of the 16S rRNAs of 10 species, including four pathogenic representatives. The results of immunological and 5S rRNA studies were confirmed in that the genus is a neighboring taxon of the family Enterobacteriaceae. With regard to the intrageneric structure, Vibrio alginolyticus, Vibrio campbellii, Vibrio natriegens, Vibrio harveyi, Vibrio proteolyticus, Vibrio parahaemolyticus, and Vibrio vulnificus form the core of the genus, while Vibrio (Listonella) anguillarum, Vibrio diazotrophicus, and Vibrio hollisae are placed on the outskirts of the genus. Variable regions around positions 80, 180, and 450 could be used as target sites for genus- and species-specific oligonucleotide probes and polymerase chain reaction primers to be used in molecular identification.

摘要

通过对包括四种致病性代表菌株在内的10个种的16S rRNA进行比较分析,研究了弧菌属的属间和属内关系。免疫学和5S rRNA研究结果得到证实,即该属是肠杆菌科的近缘分类单元。关于属内结构,溶藻弧菌、坎氏弧菌、嗜盐弧菌、哈氏弧菌、解蛋白弧菌、副溶血性弧菌和创伤弧菌构成了该属的核心,而鳗弧菌(利斯顿氏菌属)、固氮弧菌和霍氏弧菌则位于该属的边缘。80、180和450位附近的可变区可作为用于分子鉴定的属特异性和种特异性寡核苷酸探针及聚合酶链反应引物的靶位点。

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