• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用EASE在基因列表中识别生物学主题。

Identifying biological themes within lists of genes with EASE.

作者信息

Hosack Douglas A, Dennis Glynn, Sherman Brad T, Lane H Clifford, Lempicki Richard A

机构信息

Laboratory of Immunopathogenesis and Bioinformatics, PO Box B, SAIC-Frederick, Inc, Frederick, MD 21702, USA.

出版信息

Genome Biol. 2003;4(10):R70. doi: 10.1186/gb-2003-4-10-r70. Epub 2003 Sep 11.

DOI:10.1186/gb-2003-4-10-r70
PMID:14519205
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC328459/
Abstract

EASE is a customizable software application for rapid biological interpretation of gene lists that result from the analysis of microarray, proteomics, SAGE and other high-throughput genomic data. The biological themes returned by EASE recapitulate manually determined themes in previously published gene lists and are robust to varying methods of normalization, intensity calculation and statistical selection of genes. EASE is a powerful tool for rapidly converting the results of functional genomics studies from 'genes' to 'themes'.

摘要

EASE是一款可定制的软件应用程序,用于对因微阵列、蛋白质组学、SAGE及其他高通量基因组数据分析而产生的基因列表进行快速生物学解读。EASE返回的生物学主题概括了先前发表的基因列表中手动确定的主题,并且对于不同的标准化方法、强度计算和基因统计选择具有稳健性。EASE是一个将功能基因组学研究结果从“基因”快速转化为“主题”的强大工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ceb8/328459/f6f58fc85558/gb-2003-4-10-r70-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ceb8/328459/f6f58fc85558/gb-2003-4-10-r70-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ceb8/328459/f6f58fc85558/gb-2003-4-10-r70-1.jpg

相似文献

1
Identifying biological themes within lists of genes with EASE.使用EASE在基因列表中识别生物学主题。
Genome Biol. 2003;4(10):R70. doi: 10.1186/gb-2003-4-10-r70. Epub 2003 Sep 11.
2
Extracting biological meaning from large gene lists with DAVID.使用DAVID从大型基因列表中提取生物学意义。
Curr Protoc Bioinformatics. 2009 Sep;Chapter 13:Unit 13.11. doi: 10.1002/0471250953.bi1311s27.
3
MILANO--custom annotation of microarray results using automatic literature searches.米兰——使用自动文献检索对微阵列结果进行定制注释。
BMC Bioinformatics. 2005 Jan 20;6:12. doi: 10.1186/1471-2105-6-12.
4
PubMatrix: a tool for multiplex literature mining.PubMatrix:一种用于多重文献挖掘的工具。
BMC Bioinformatics. 2003 Dec 10;4:61. doi: 10.1186/1471-2105-4-61.
5
Development of gene ontology tool for biological interpretation of genomic and proteomic data.用于基因组和蛋白质组数据生物学解释的基因本体工具的开发。
AMIA Annu Symp Proc. 2003;2003:839.
6
List of lists-annotated (LOLA): a database for annotation and comparison of published microarray gene lists.列表注释列表(LOLA):一个用于已发表微阵列基因列表注释和比较的数据库。
Gene. 2005 Oct 24;360(1):78-82. doi: 10.1016/j.gene.2005.07.008. Epub 2005 Sep 2.
7
GeneTrail--advanced gene set enrichment analysis.GeneTrail——高级基因集富集分析
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W186-92. doi: 10.1093/nar/gkm323. Epub 2007 May 25.
8
A systematic approach to infer biological relevance and biases of gene network structures.一种推断基因网络结构的生物学相关性和偏差的系统方法。
Nucleic Acids Res. 2006 Jan 10;34(1):e6. doi: 10.1093/nar/gnj002.
9
Mining published lists of cancer related microarray experiments: identification of a gene expression signature having a critical role in cell-cycle control.挖掘已发表的癌症相关微阵列实验列表:鉴定在细胞周期调控中起关键作用的基因表达特征。
BMC Bioinformatics. 2005 Dec 1;6 Suppl 4(Suppl 4):S14. doi: 10.1186/1471-2105-6-S4-S14.
10
GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining.GFINDer:通过动态注释、统计分析和挖掘实现的基因组功能综合发现工具。
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W293-300. doi: 10.1093/nar/gkh432.

引用本文的文献

1
Transcriptional modulation unique to vulnerable motor neurons predicts ALS across species and SOD1 mutations.易损运动神经元特有的转录调控可预测跨物种和SOD1突变的肌萎缩侧索硬化症。
Genome Res. 2025 Sep 2;35(9):1975-1991. doi: 10.1101/gr.279501.124.
2
Multiscale regulation of nutrient stress responses in Escherichia coli from chromatin structure to small regulatory RNAs.大肠杆菌中从染色质结构到小调节RNA的营养应激反应的多尺度调控
Nucleic Acids Res. 2025 Jul 8;53(13). doi: 10.1093/nar/gkaf647.
3
Systematic analysis of the antibacterial mechanisms of reuterin using the Keio collection.

本文引用的文献

1
DAVID: Database for Annotation, Visualization, and Integrated Discovery.DAVID:注释、可视化与整合发现数据库。
Genome Biol. 2003;4(5):P3. Epub 2003 Apr 3.
2
GoMiner: a resource for biological interpretation of genomic and proteomic data.GoMiner:一个用于基因组和蛋白质组数据生物学解释的资源。
Genome Biol. 2003;4(4):R28. doi: 10.1186/gb-2003-4-4-r28. Epub 2003 Mar 25.
3
Statistical tests for differential expression in cDNA microarray experiments.cDNA微阵列实验中差异表达的统计检验。
利用大肠杆菌基因敲除文库对罗伊氏菌素抗菌机制进行系统分析。
mBio. 2025 Aug 13;16(8):e0143225. doi: 10.1128/mbio.01432-25. Epub 2025 Jul 3.
4
Drug Search and Design Considering Cell Specificity of Chemically Induced Gene Expression Profiles for Disease-Associated Tissues.基于化学诱导基因表达谱的细胞特异性对疾病相关组织进行药物搜索与设计
Mol Inform. 2025 Jun;44(5-6):e2444. doi: 10.1002/minf.2444.
5
Exercise without Weight Loss Prevents Seasonal Decline in Vitamin D Metabolites: The VitaDEx Randomized Controlled Trial.无体重减轻的运动可预防维生素D代谢物的季节性下降:VitaDEx随机对照试验
Adv Sci (Weinh). 2025 Jun;12(22):e2416312. doi: 10.1002/advs.202416312. Epub 2025 May 11.
6
Systematic reconstruction of molecular pathway signatures using scalable single-cell perturbation screens.使用可扩展的单细胞扰动筛选系统重建分子通路特征
Nat Cell Biol. 2025 Mar;27(3):505-517. doi: 10.1038/s41556-025-01622-z. Epub 2025 Feb 26.
7
RNA sequencing identifies and as predictive genes of aging CD264 human mesenchymal stem cells at an early passage.RNA测序鉴定出CD264人骨髓间充质干细胞早期传代时的衰老预测基因。 (原句中“identifies and as predictive genes”表述似乎不完整,推测原文可能是“identifies [genes] and [genes] as predictive genes” ,翻译时补充完整了成分。)
Cytotechnology. 2025 Apr;77(2):63. doi: 10.1007/s10616-025-00724-8. Epub 2025 Feb 19.
8
An untargeted metabolome-wide association study of maternal perinatal tobacco smoking in newborn blood spots.一项针对新生儿血斑中母亲围产期吸烟情况的非靶向全代谢组关联研究。
Metabolomics. 2025 Feb 20;21(2):30. doi: 10.1007/s11306-025-02225-3.
9
Non-cell-autonomous regulation of mTORC2 by Hedgehog signaling maintains lipid homeostasis.刺猬信号通路对mTORC2的非细胞自主调节维持脂质稳态。
Cell Rep. 2025 Jan 28;44(1):115191. doi: 10.1016/j.celrep.2024.115191. Epub 2025 Jan 7.
10
Phenotypic and Genomic Signatures of Latitudinal Local Adaptation Along With Prevailing Ocean Current in a Coastal Goby.一种沿海虾虎鱼中与主要洋流相关的纬度局部适应性的表型和基因组特征
Mol Ecol. 2025 Jan;34(2):e17599. doi: 10.1111/mec.17599. Epub 2024 Dec 16.
Genome Biol. 2003;4(4):210. doi: 10.1186/gb-2003-4-4-210. Epub 2003 Mar 17.
4
A method for the comprehensive proteomic analysis of membrane proteins.一种用于膜蛋白综合蛋白质组学分析的方法。
Nat Biotechnol. 2003 May;21(5):532-8. doi: 10.1038/nbt819. Epub 2003 Apr 14.
5
Gene expression and viral prodution in latently infected, resting CD4+ T cells in viremic versus aviremic HIV-infected individuals.病毒血症与无病毒血症的HIV感染者中潜伏感染的静息CD4+ T细胞的基因表达和病毒产生
Proc Natl Acad Sci U S A. 2003 Feb 18;100(4):1908-13. doi: 10.1073/pnas.0437640100. Epub 2003 Jan 27.
6
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data.MAPPFinder:利用基因本体论和GenMAPP从微阵列数据创建全局基因表达谱。
Genome Biol. 2003;4(1):R7. doi: 10.1186/gb-2003-4-1-r7. Epub 2003 Jan 6.
7
MGD: the Mouse Genome Database.MGD:小鼠基因组数据库。
Nucleic Acids Res. 2003 Jan 1;31(1):193-5. doi: 10.1093/nar/gkg047.
8
The FlyBase database of the Drosophila genome projects and community literature.果蝇基因组计划及相关文献的FlyBase数据库。
Nucleic Acids Res. 2003 Jan 1;31(1):172-5. doi: 10.1093/nar/gkg094.
9
Database resources of the National Center for Biotechnology.国家生物技术信息中心的数据库资源。
Nucleic Acids Res. 2003 Jan 1;31(1):28-33. doi: 10.1093/nar/gkg033.
10
From patterns to pathways: gene expression data analysis comes of age.从模式到通路:基因表达数据分析渐趋成熟。
Nat Genet. 2002 Dec;32 Suppl:502-8. doi: 10.1038/ng1033.