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[描述扩展配体与DNA分子结合的分布函数。在DNA凝聚情况中的可能应用]

[Distribution functions, describing the binding of extended ligands with DNA molecules. Possible use for cases of DNA condensation].

作者信息

Nechipurenko Iu D, Vol'f A M, Evdokimov Iu M

机构信息

Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Lomonosov Moscow State University, Bioanaliticheskie Tekhnologii Company, Moscow, Russia.

出版信息

Biofizika. 2003 Sep-Oct;48(5):802-11.

Abstract

Due to noncooperative binding of ligands to DNA molecules, DNA molecules are in equilibrium with different numbers of adsorbed ligands. This equilibrium for a given concentration of the free ligand in the solution is characterized by the distribution function, which describes the probability of revealing the DNA molecule with a definite number of adsorbed ligands. If polycations act as ligands, DNA molecules with the number of ligands sufficient for neutralizing the charges on phosphates may undergo a phase transition. One example of this transition is the formation of liquid-crystalline dispersions during the binding of DNA to chitosan. We analyzed the binding of chitosan to DNA on the assumption that this binding is due to equilibrium adsorption. At a definite concentration of chitosan in solution, DNA molecules are in equilibrium with different numbers of adsorbed molecules of chitosan. If the number of adsorbed ligands exceeds some critical value, the DNA molecule covered with chitosan becomes capable of interacting with other DNA molecules. As a result of this interaction (attraction), liquid-crystalline dispersions can form. Equations describing the dependence of the concentration of DNA molecules on the concentration of the ligand in solution were derived. It was shown that, at given parameters of the model, it is possible to describe experimental data characterizing the formation of cholesteric liquid-crystalline dispersions. The analysis of the data makes it possible to reconstitute both the size of the binding site occupied by chitosan on the DNA and the energy of interaction of chitosan with DNA.

摘要

由于配体与DNA分子的非协同结合,DNA分子与不同数量的吸附配体处于平衡状态。溶液中给定浓度的游离配体的这种平衡由分布函数表征,该函数描述了具有确定数量吸附配体的DNA分子出现的概率。如果聚阳离子作为配体,具有足以中和磷酸盐上电荷的配体数量的DNA分子可能会发生相变。这种转变的一个例子是DNA与壳聚糖结合过程中液晶分散体的形成。我们在这种结合是由于平衡吸附的假设下分析了壳聚糖与DNA的结合。在溶液中壳聚糖的确定浓度下,DNA分子与不同数量的吸附壳聚糖分子处于平衡状态。如果吸附配体的数量超过某个临界值,被壳聚糖覆盖的DNA分子就能够与其他DNA分子相互作用。这种相互作用(吸引)的结果是可以形成液晶分散体。推导了描述溶液中DNA分子浓度对配体浓度依赖性的方程。结果表明,在模型的给定参数下,可以描述表征胆甾型液晶分散体形成的实验数据。对数据的分析使得可以重构壳聚糖在DNA上占据的结合位点的大小以及壳聚糖与DNA的相互作用能。

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