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FELINES: a utility for extracting and examining EST-defined introns and exons.
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3
Introns and splicing elements of five diverse fungi.
Eukaryot Cell. 2004 Oct;3(5):1088-100. doi: 10.1128/EC.3.5.1088-1100.2004.
6
Intron-exon structures of eukaryotic model organisms.
Nucleic Acids Res. 1999 Aug 1;27(15):3219-28. doi: 10.1093/nar/27.15.3219.
7
Bioinformatic analysis of exon repetition, exon scrambling and trans-splicing in humans.
Bioinformatics. 2006 Mar 15;22(6):692-8. doi: 10.1093/bioinformatics/bti795. Epub 2005 Nov 24.
8
Analysis of canonical and non-canonical splice sites in mammalian genomes.
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9
Identification of true EST alignments for recognising transcribed regions.
Int J Data Min Bioinform. 2011;5(5):465-84. doi: 10.1504/ijdmb.2011.043029.
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Evolution of the Early Spliceosomal Complex-From Constitutive to Regulated Splicing.
Int J Mol Sci. 2021 Nov 18;22(22):12444. doi: 10.3390/ijms222212444.
2
Widespread exon skipping triggers degradation by nuclear RNA surveillance in fission yeast.
Genome Res. 2015 Jun;25(6):884-96. doi: 10.1101/gr.185371.114. Epub 2015 Apr 16.
4
LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq.
Genome Res. 2014 Jul;24(7):1169-79. doi: 10.1101/gr.166819.113. Epub 2014 Apr 7.
5
Mechanisms of intron loss and gain in the fission yeast Schizosaccharomyces.
PLoS One. 2013 Apr 17;8(4):e61683. doi: 10.1371/journal.pone.0061683. Print 2013.
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Identification and analysis of in planta expressed genes of Magnaporthe oryzae.
BMC Genomics. 2010 Feb 10;11:104. doi: 10.1186/1471-2164-11-104.
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Exonic splicing enhancers in fission yeast: functional conservation demonstrates an early evolutionary origin.
Genes Dev. 2005 Jan 15;19(2):242-54. doi: 10.1101/gad.1265905. Epub 2004 Dec 29.

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CDS annotation in full-length cDNA sequence.
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The effects of selection against spurious transcription factor binding sites.
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Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns.
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Computational identification of putative programmed translational frameshift sites.
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Alternative pre-mRNA splicing and proteome expansion in metazoans.
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Searching yeast intron data at Ares lab Web site.
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The genome sequence of Schizosaccharomyces pombe.
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Spidey: a tool for mRNA-to-genomic alignments.
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Genomes OnLine Database (GOLD): a monitor of genome projects world-wide.
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