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通过水合二棕榈酰磷脂酰胆碱脂质双层的渗透:可滴定两亲性药物丙戊酸的模拟

Permeation across hydrated DPPC lipid bilayers: simulation of the titrable amphiphilic drug valproic acid.

作者信息

Ulander Johan, Haymet A D J

机构信息

Department of Biochemistry and Chemistry, University of California at San Diego, La Jolla, California, USA.

出版信息

Biophys J. 2003 Dec;85(6):3475-84. doi: 10.1016/S0006-3495(03)74768-7.

Abstract

Valproic acid is a short branched fatty acid used as an anticonvulsant drug whose therapeutic action has been proposed to arise from membrane-disordering properties. Static and kinetic properties of valproic acid interacting with fully hydrated dipalmitoyl phosphatidylcholine lipid bilayers are studied using molecular-dynamics simulations. We calculate spatially resolved free energy profiles and local diffusion coefficients using the distance between the bilayer and valproic acid respective centers-of-mass along the bilayer normal as reaction coordinate. To investigate the pH dependence, we calculate profiles for the neutral valproic acid as well as its water-soluble anionic conjugate base valproate. The local diffusion constants for valproate/valproic acid along the bilayer normal are found to be approximately 10(-6) to 10(-5) cm2 s(-1). Assuming protonation of valproic acid upon association with--or insertion into--the lipid bilayer, we calculate the permeation coefficient to be approximately 2.0 10(-3) cm s(-1), consistent with recent experimental estimates of fast fatty acid transport. The ability of the lipid bilayer to sustain local defects such as water intrusions stresses the importance of going beyond mean field and taking into account correlation effects in theoretical descriptions of bilayer translocation processes.

摘要

丙戊酸是一种短链支链脂肪酸,用作抗惊厥药物,其治疗作用被认为源于膜紊乱特性。使用分子动力学模拟研究了丙戊酸与完全水合的二棕榈酰磷脂酰胆碱脂质双层相互作用的静态和动力学特性。我们以双层与丙戊酸各自质心沿双层法线的距离作为反应坐标,计算空间分辨的自由能分布和局部扩散系数。为了研究pH依赖性,我们计算了中性丙戊酸及其水溶性阴离子共轭碱丙戊酸盐的分布。发现丙戊酸盐/丙戊酸沿双层法线的局部扩散常数约为10^(-6)至10^(-5) cm² s^(-1)。假设丙戊酸与脂质双层结合或插入时发生质子化,我们计算出渗透系数约为2.0×10^(-3) cm s^(-1),这与最近关于快速脂肪酸转运的实验估计一致。脂质双层维持局部缺陷(如水侵入)的能力强调了在双层转运过程的理论描述中超越平均场并考虑相关效应的重要性。

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本文引用的文献

2
A computer simulation of functional group contributions to free energy in water and a DPPC lipid bilayer.
Biophys J. 2002 Apr;82(4):2052-66. doi: 10.1016/S0006-3495(02)75553-7.
3
Molecular dynamics simulation of dipalmitoylphosphatidylserine bilayer with Na+ counterions.
Biophys J. 2002 Apr;82(4):1818-27. doi: 10.1016/S0006-3495(02)75532-X.
4
Dynamical properties of a hydrated lipid bilayer from a multinanosecond molecular dynamics simulation.
Biophys J. 2001 Nov;81(5):2484-94. doi: 10.1016/S0006-3495(01)75894-8.
5
Mechanism of unassisted ion transport across membrane bilayers.
J Am Chem Soc. 1996 Jul 17;118(28):6580-7. doi: 10.1021/ja9540381.
6
Continuum solvent model studies of the interactions of an anticonvulsant drug with a lipid bilayer.
Biophys J. 2001 Jun;80(6):2536-45. doi: 10.1016/S0006-3495(01)76225-X.
8
Influence of a transmembrane protein on the permeability of small molecules across lipid membranes.
J Membr Biol. 2000 Feb 1;173(3):187-201. doi: 10.1007/s002320001019.
9
Dynamical properties of phospholipid bilayers from computer simulation.
Biophys J. 1999 Apr;76(4):2081-9. doi: 10.1016/S0006-3495(99)77364-9.

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