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揭示龙虾壳颜色形成机制的结构化学

Unravelling the structural chemistry of the colouration mechanism in lobster shell.

作者信息

Chayen Naomi E, Cianci Michele, Grossmann J Günter, Habash Jarjis, Helliwell John R, Nneji Gwen A, Raftery James, Rizkallah Pierre J, Zagalsky Peter F

机构信息

Imperial College, London SW7 2AZ, England.

出版信息

Acta Crystallogr D Biol Crystallogr. 2003 Dec;59(Pt 12):2072-82. doi: 10.1107/s0907444903025952. Epub 2003 Nov 27.

DOI:10.1107/s0907444903025952
PMID:14646064
Abstract

Biochemistry, biological crystallography, spectroscopy, solution X-ray scattering and microscopy have been applied to study the molecular basis of the colouration in lobster shell. This article presents a review of progress concentrating on recent results but set in the context of more than 50 years of work. The blue colouration of the carapace of the lobster Homarus gammarus is provided by a multimolecular carotenoprotein, alpha-crustacyanin. The complex is a 16-mer of five different subunits each binding the carotenoid, astaxanthin (AXT). A breakthrough in the structural studies came from the determination of the structure of beta-crustacyanin (protein subunits A1 with A3 with two shared bound astaxanthins). This was solved by molecular replacement using apocrustacyanin A1 as the search motif. A molecular movie has now been calculated by linear interpolation based on these two 'end-point' protein structures, i.e. apocrustacyanin A1 and A1 associated with the two astaxanthins in beta-crustacyanin, and is presented with this paper. This movie highlights the structural changes forced upon the carotenoid on complexation. In contrast, the protein-binding site remains relatively unchanged in the binding region, but there is a large conformational change occurring in a more remote surface-loop region. It is suggested here that this loop could be important in complexation of AXT and contributes to the spectral properties. Also presented here is the first observation of single-crystal diffraction of the full 'alpha-crustacyanin' complex comprising 16 protein subunits and 16 bound AXT molecules (i.e eight beta-crustacyanins) at 5 A resolution. Optimization of crystallization conditions is still necessary as these patterns show multiple crystallite character, however, 10 A resolution single-crystal diffraction has now been achieved. Provision of the new SRS MPW 10 and SRS MPW 14 beamline robotic systems will greatly assist in the surveying of the many alpha-crustacyanin crystallization trials that are being made. New solution X-ray scattering (SXS) measurements of beta- and alpha-crustacyanin are also presented. The beta-crustacyanin SXS data serve to show how the holo complex fits the SXS curve, whereas the apocrustacyanin A1 homodimer from the crystal data naturally does not. Reconstructions of alpha-crustacyanin were accomplished from its scattering-profile shape. The most plausible ultrastructure, based on a fourfold symmetry constraint, was found to be a stool with four legs. The latter is compared with published electron micrographs. A detailed crystal structure of alpha-crustacyanin is now sought in order to relate the full 150 nm bathochromic shift of AXT to that complete molecular structure, compared with the 100 nm achieved by the beta-crustacyanin protein dimer alone. Rare lobster colourations have been brought to attention as a result of this work and are discussed in an appendix.

摘要

生物化学、生物晶体学、光谱学、溶液X射线散射和显微镜技术已被应用于研究龙虾壳颜色形成的分子基础。本文综述了相关进展,着重介绍近期研究成果,并将其置于五十多年的研究背景之中。龙虾(螯龙虾)外壳的蓝色由一种多分子类胡萝卜素蛋白——α - 甲壳蓝蛋白提供。该复合物是由五个不同亚基组成的十六聚体,每个亚基都结合类胡萝卜素虾青素(AXT)。结构研究的一个突破是确定了β - 甲壳蓝蛋白(蛋白质亚基A1与A3,带有两个共享结合的虾青素)的结构。这是通过以脱辅基甲壳蓝蛋白A1作为搜索基序进行分子置换解决的。现在基于这两个“端点”蛋白质结构,即脱辅基甲壳蓝蛋白A1和与β - 甲壳蓝蛋白中两个虾青素相关联的A1,通过线性插值计算出了一个分子动画,并随本文一同展示。这个动画突出了类胡萝卜素在复合过程中被迫发生的结构变化。相比之下,蛋白质结合位点在结合区域相对保持不变,但在更远处的表面环区域发生了较大的构象变化。本文认为这个环在AXT的复合过程中可能很重要,并对光谱特性有贡献。本文还首次报道了包含16个蛋白质亚基和16个结合的AXT分子(即八个β - 甲壳蓝蛋白)的完整“α - 甲壳蓝蛋白”复合物在5埃分辨率下的单晶衍射情况。由于这些图案显示出多微晶特征,因此仍需要优化结晶条件,不过现在已经实现了10埃分辨率的单晶衍射。新的SRS MPW 10和SRS MPW 14光束线机器人系统将极大地有助于对正在进行的众多α - 甲壳蓝蛋白结晶试验进行研究。本文还展示了对β - 和α - 甲壳蓝蛋白新的溶液X射线散射(SXS)测量结果。β - 甲壳蓝蛋白的SXS数据用于展示全蛋白复合物如何拟合SXS曲线,而来自晶体数据的脱辅基甲壳蓝蛋白A1同二聚体自然不会。根据其散射轮廓形状完成了α - 甲壳蓝蛋白的重构。基于四重对称约束,最合理的超结构被发现是一个有四条腿的凳子。将后者与已发表的电子显微镜图像进行了比较。现在正在寻求α - 甲壳蓝蛋白的详细晶体结构,以便将AXT完整的150纳米红移与完整的分子结构联系起来,相比之下,单独的β - 甲壳蓝蛋白蛋白质二聚体可实现100纳米的红移。这项研究工作使人们关注到了罕见的龙虾颜色,并在附录中进行了讨论。

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