Donachie Stuart P, Hou Shaobin, Gregory Todd S, Malahoff Alexander, Alam Maqsudul
Department of Microbiology, University of Hawai'i, Snyder Hall III, 2538 The Mall, Honolulu, HI 96822, USA.
Int J Syst Evol Microbiol. 2003 Nov;53(Pt 6):1873-9. doi: 10.1099/ijs.0.02701-0.
During an investigation of bacterial diversity at hydrothermal vents on the Lō'ihi Seamount, Hawai'i, a novel bacterium (designated L2-TR(T)) was cultivated, which shares 99.9 % 16S rRNA gene sequence similarity over 1415 nt with an uncultured eubacterium from sediment at a depth of 11 000 m in the Mariana Trench. The nearest cultivated neighbour of L2-TR(T), however, is Idiomarina abyssalis KMM 227(T), with which it shares 98.9 % 16S rRNA sequence similarity. L2-TR(T) differed from I. abyssalis KMM 227(T) in several phenotypic respects, including growth at 46 degrees C and in medium that contained 20 % (w/v) NaCl. DNA-DNA hybridization data showed that L2-TR(T) did not belong to the species I. abyssalis (43.4 % DNA-DNA reassociation). Cells of L2-TR(T) were Gram-negative rods, 0.35 microm wide and 0.7-1.0 microm long, which were occasionally up to 1.8 microm in length. Cells were motile by a single polar or subpolar flagellum. The major fatty acid in L2-TR(T) was iso-C(15 : 0) (32.6 %). The DNA G+C content was 47.4 mol%. Phenotypic and genotypic analyses indicated that L2-TR(T) could be assigned to the genus Idiomarina but, based on significant phenotypic and genotypic differences, constituted a novel species within this genus, Idiomarina loihiensis sp. nov., of which L2-TR(T) (=ATCC BAA-735(T)=DSM 15497(T)) is the type strain.
在对夏威夷洛希海山热液喷口的细菌多样性进行调查期间,培养出了一种新型细菌(命名为L2-TR(T)),该细菌与来自马里亚纳海沟11000米深处沉积物中的一种未培养真细菌在1415个核苷酸上的16S rRNA基因序列相似性为99.9%。然而,L2-TR(T)最接近的已培养亲缘种是深渊海idiomarina KMM 227(T),与之16S rRNA序列相似性为98.9%。L2-TR(T)在几个表型方面与深渊海idiomarina KMM 227(T)不同,包括在46℃以及含有20%(w/v)氯化钠的培养基中生长。DNA-DNA杂交数据表明L2-TR(T)不属于深渊海idiomarina物种(DNA-DNA重结合率为43.4%)。L2-TR(T)的细胞为革兰氏阴性杆菌,宽0.35微米,长0.7 - 1.0微米,偶尔长度可达1.8微米。细胞通过单根极鞭毛或亚极鞭毛运动。L2-TR(T)中的主要脂肪酸是异-C(15 : 0)(32.6%)。DNA G+C含量为47.4摩尔%。表型和基因型分析表明,L2-TR(T)可归入深渊海idiomarina属,但基于显著的表型和基因型差异,在该属内构成一个新物种,即洛希海深渊海idiomarina(Idiomarina loihiensis sp. nov.),其中L2-TR(T)(=ATCC BAA-735(T)=DSM 15497(T))为模式菌株。