Wist Julien, Frueh Dominique, Tolman Joel R, Bodenhausen Geoffrey
Institute of molecular and biological chemistry, Swiss Federal Institute of Technology Lausanne (EPFL), CH 1015 Lausanne, Switzerland.
J Biomol NMR. 2004 Mar;28(3):263-72. doi: 10.1023/B:JNMR.0000013699.48099.38.
A new experiment allows the identification of residues that feature slow conformational exchange in macromolecules. Rotations about dihedral angles that are slower than the global correlation time tau(c) cause a modulation of the isotropic chemical shifts of the nuclei. If these fluctuations are correlated they induce a differential line broadening between three-spin single-quantum and triple-quantum coherences involving three nuclei such as the carbonyl C', the neighbouring amide nitrogen N and the amide proton H(N) belonging to a pair of consecutive amino acids. A cross-correlated relaxation rate R (CS/CS)(C'N) can be determined that corresponds to the sum of the isotropic and anisotropic contributions to the chemical shift modulations of the carbonyl carbon and nitrogen nuclei. Only the isotropic contributions depend on the pulse repetition rate of a multiple-refocusing sequence. An attenuation of the relaxation rate with increasing pulse repetition rate can therefore be attributed to slow motions. The asparagine N25 residue of ubiquitin, located in the first alpha-helix, is shown to feature significant slow conformational exchange.
一项新实验能够识别大分子中具有缓慢构象交换特征的残基。围绕二面角的旋转若慢于全局相关时间tau(c),会导致原子核各向同性化学位移的调制。如果这些涨落是相关的,它们会在涉及三个原子核(如羰基C'、相邻的酰胺氮N和属于一对连续氨基酸的酰胺质子H(N))的三自旋单量子和三量子相干之间引起微分线宽化。可以确定一个交叉相关弛豫率R(CS/CS)(C'N),它对应于羰基碳和氮原子核化学位移调制的各向同性和各向异性贡献之和。只有各向同性贡献取决于多重重聚焦序列的脉冲重复率。因此,弛豫率随脉冲重复率增加而衰减可归因于缓慢运动。位于第一个α-螺旋中的泛素天冬酰胺N25残基显示出显著的缓慢构象交换。