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利用场依赖测量对构象交换对1H-15N多量子弛豫的贡献进行定量分析。钙调蛋白C末端结构域突变体中交换的时间尺度和结构表征。

Quantitative analysis of conformational exchange contributions to 1H-15N multiple-quantum relaxation using field-dependent measurements. Time scale and structural characterization of exchange in a calmodulin C-terminal domain mutant.

作者信息

Lundström Patrik, Akke Mikael

机构信息

Department of Biophysical Chemistry, Lund University, P.O. Box 124, SE-221 00 Lund, Sweden.

出版信息

J Am Chem Soc. 2004 Jan 28;126(3):928-35. doi: 10.1021/ja037529r.

Abstract

Multiple-quantum spin relaxation is a sensitive probe for correlated conformational exchange dynamics on microsecond to millisecond time scales in biomolecules. We measured differential 1H-15N multiple-quantum relaxation rates for the backbone amide groups of the E140Q mutant of the C-terminal domain of calmodulin at three static magnetic field strengths. The differential multiple-quantum relaxation rates range between -88.7 and 92.7 s(-1), and the mean and standard deviation are 7.0 +/- 24 s(-1), at a static magnetic field strength of 14.1 T. Together with values of the 1H and 15N chemical shift anisotropies (CSA) determined separately, the field-dependent data enable separation of the different contributions from dipolar-dipolar, CSA-CSA, and conformational exchange cross-correlated relaxation mechanisms to the differential multiple-quantum relaxation rates. The procedure yields precise quantitative information on the dominant conformational exchange contributions observed in this protein. The field-dependent differences between double- and zero-quantum relaxation rates directly benchmark the rates of conformational exchange, showing that these are fast on the chemical shift time scale for the large majority of residues in the protein. Further analysis of the differential 1H-15N multiple-quantum relaxation rates using previously determined exchange rate constants and populations, obtained from 15N off-resonance rotating-frame relaxation data, enables extraction of the product of the chemical shift differences between the resonance frequencies of the 1H and 15N spins in the exchanging conformations, deltasigma(H)deltasigma(N). Thus, information on the 1H chemical shift differences is obtained, while circumventing complications associated with direct measurements of conformational exchange effects on 1H single-quantum coherences in nondeuterated proteins. The method significantly increases the information content available for structural interpretation of the conformational exchange process, partly because deltasigma(H)deltasigma(N) is a signed quantity, and partly because two chemical shifts are probed simultaneously. The present results support the hypothesis that the exchange in the calcium-loaded state of the E140Q mutant involves conformations similar to those of the wild-type apo (closed) and calcium-loaded (open) states.

摘要

多量子自旋弛豫是一种灵敏的探针,用于探测生物分子中微秒至毫秒时间尺度上的相关构象交换动力学。我们在三种静态磁场强度下测量了钙调蛋白C端结构域E140Q突变体主链酰胺基团的差分1H-15N多量子弛豫率。在14.1 T的静态磁场强度下,差分多量子弛豫率在-88.7至92.7 s(-1)之间,平均值和标准差为7.0±24 s(-1)。结合分别测定的1H和15N化学位移各向异性(CSA)值,磁场依赖数据能够分离偶极-偶极、CSA-CSA和构象交换交叉相关弛豫机制对差分多量子弛豫率的不同贡献。该方法产生了关于该蛋白质中观察到的主要构象交换贡献的精确定量信息。双量子和零量子弛豫率之间的磁场依赖差异直接标定了构象交换率,表明对于该蛋白质中的大多数残基来说,这些交换在化学位移时间尺度上是快速的。利用先前从15N非共振旋转框架弛豫数据获得的交换率常数和布居数,对差分1H-15N多量子弛豫率进行进一步分析,能够提取交换构象中1H和15N自旋共振频率之间的化学位移差的乘积,即δσ(H)δσ(N)。因此,获得了关于1H化学位移差的信息,同时避免了与直接测量非氘代蛋白质中1H单量子相干的构象交换效应相关的复杂性。该方法显著增加了可用于构象交换过程结构解释的信息量,部分原因是δσ(H)δσ(N)是一个有符号量,部分原因是同时探测两个化学位移。目前的结果支持这样的假设,即E140Q突变体钙负载状态下的交换涉及与野生型脱辅基(闭合)和钙负载(开放)状态相似的构象。

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