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虹鳟鱼cDNA文库的序列分析及基因索引的创建。

Sequence analysis of a rainbow trout cDNA library and creation of a gene index.

作者信息

Rexroad C E, Lee Y, Keele J W, Karamycheva S, Brown G, Koop B, Gahr S A, Palti Y, Quackenbush J

机构信息

USDA/ARS National Center for Cool and Cold Water Aquaculture, Kearneysville, West Virginia 25430, USA.

出版信息

Cytogenet Genome Res. 2003;102(1-4):347-54. doi: 10.1159/000075773.

DOI:10.1159/000075773
PMID:14970727
Abstract

Expressed sequence tag (EST) projects have produced extremely valuable resources for identifying genes affecting phenotypes of interest. A large-scale EST sequencing project for rainbow trout was initiated to identify and functionally annotate as many unique transcripts as possible. Over 45,000 5' ESTs were obtained by sequencing clones from a single normalized library constructed using mRNA from six tissues. The production of this sequence data and creation of a rainbow trout Gene Index eliminating redundancy and providing annotation for these sequences will facilitate research in this species.

摘要

表达序列标签(EST)项目为鉴定影响目标表型的基因提供了极其宝贵的资源。为了尽可能多地鉴定和功能注释独特转录本,启动了一项虹鳟鱼大规模EST测序项目。通过对来自使用六个组织的mRNA构建的单个标准化文库的克隆进行测序,获得了超过45,000个5' EST。这些序列数据的产生以及虹鳟鱼基因索引的创建,消除了冗余并为这些序列提供了注释,将有助于该物种的研究。

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