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TIM10伴侣蛋白组装体的结构基础。

The structural basis of the TIM10 chaperone assembly.

作者信息

Lu Hui, Golovanov Alexander P, Alcock Felicity, Grossmann J Günter, Allen Scott, Lian Lu-Yun, Tokatlidis Kostas

机构信息

School of Biological Sciences, University of Manchester, Oxford Road, Manchester M13 9PT, United Kingdom.

出版信息

J Biol Chem. 2004 Apr 30;279(18):18959-66. doi: 10.1074/jbc.M313046200. Epub 2004 Feb 18.

DOI:10.1074/jbc.M313046200
PMID:14973126
Abstract

Tim9 and Tim10 are essential components of the "small Tim" family of proteins that facilitate insertion of polytopic proteins at the inner mitochondrial membrane. The small Tims are themselves imported from the cytosol and are organized in specific translocation assemblies in the intermembrane space. Their conformational properties and how these influence the mechanism of assembly remain poorly understood. Moreover, the three-dimensional structure of the TIM10 complex is unknown. We have characterized the structural properties of these proteins in their free and assembled states using NMR, circular dichroism, and small angle x-ray scattering. We show that the free proteins are largely unfolded in their reduced assembly-incompetent state and molten globules in their oxidized assembly-competent state. Tim10 appears less structured than Tim9 in their respective free oxidized forms and undergoes a larger structural change than Tim9 upon complexation. The NMR data here demonstrates unequivocally that only the oxidized states of the Tim9 and Tim10 proteins are capable of forming a complex. Zinc binding stabilizes the reduced state against proteolysis without significantly affecting the secondary structure. Solution x-ray scattering was used to obtain a molecular envelope for the subunits individually and for their fully functional TIM10 complex. Ab initio shape reconstructions based on the scattering data has allowed us to obtain the first low resolution three-dimensional structure of the TIM10 complex. This is a novel structure that displays extensive surface hydrophobicity. The structure also provides an explanation for the escorting function of this non-ATP-powered chaperone particle.

摘要

Tim9和Tim10是“小Tim”蛋白家族的重要组成部分,该家族蛋白有助于多跨膜蛋白插入线粒体内膜。小Tim蛋白本身从细胞质中导入,并在内膜间隙中组织成特定的转运组装体。它们的构象特性以及这些特性如何影响组装机制仍知之甚少。此外,TIM10复合物的三维结构尚不清楚。我们使用核磁共振(NMR)、圆二色性和小角X射线散射对这些蛋白质在游离状态和组装状态下的结构特性进行了表征。我们发现,游离蛋白在还原状态下大多处于未折叠状态,无组装能力,而在氧化状态下则为熔球态,具有组装能力。在各自的游离氧化形式中,Tim10的结构似乎比Tim9的结构更少,并且在形成复合物时比Tim9经历更大的结构变化。这里的NMR数据明确表明,只有Tim9和Tim10蛋白的氧化态能够形成复合物。锌结合可稳定还原状态,防止其被蛋白酶水解,而不会显著影响二级结构。溶液X射线散射用于单独获得亚基及其完全功能性TIM10复合物的分子包络。基于散射数据的从头形状重建使我们能够获得TIM10复合物的首个低分辨率三维结构。这是一种具有广泛表面疏水性的新型结构。该结构还为这种非ATP驱动的伴侣颗粒的护送功能提供了解释。

相似文献

1
The structural basis of the TIM10 chaperone assembly.TIM10伴侣蛋白组装体的结构基础。
J Biol Chem. 2004 Apr 30;279(18):18959-66. doi: 10.1074/jbc.M313046200. Epub 2004 Feb 18.
2
Assembly of the mitochondrial Tim9-Tim10 complex: a multi-step reaction with novel intermediates.线粒体Tim9-Tim10复合物的组装:一个具有新型中间体的多步反应。
J Mol Biol. 2008 Jan 4;375(1):229-39. doi: 10.1016/j.jmb.2007.10.037. Epub 2007 Oct 22.
3
Structural and functional requirements for activity of the Tim9-Tim10 complex in mitochondrial protein import.Tim9-Tim10复合物在线粒体蛋白质输入中发挥活性的结构和功能要求。
Mol Biol Cell. 2009 Feb;20(3):769-79. doi: 10.1091/mbc.e08-09-0903. Epub 2008 Nov 26.
4
Distinct domains of small Tims involved in subunit interaction and substrate recognition.小Tim的不同结构域参与亚基相互作用和底物识别。
J Mol Biol. 2005 Aug 26;351(4):839-49. doi: 10.1016/j.jmb.2005.06.010.
5
Assembly of Tim9 and Tim10 into a functional chaperone.Tim9和Tim10组装成功能性伴侣蛋白。
J Biol Chem. 2002 Sep 27;277(39):36100-8. doi: 10.1074/jbc.M202310200. Epub 2002 Jul 22.
6
Temperature-dependent study reveals that dynamics of hydrophobic residues plays an important functional role in the mitochondrial Tim9-Tim10 complex.温度依赖性研究表明,疏水残基的动力学在线粒体Tim9-Tim10复合物中发挥着重要的功能作用。
Proteins. 2012 Feb;80(2):602-15. doi: 10.1002/prot.23224. Epub 2011 Nov 17.
7
Mitochondrial Tim9 protects Tim10 from degradation by the protease Yme1.线粒体Tim9保护Tim10不被蛋白酶Yme1降解。
Biosci Rep. 2015 Mar 17;35(3):e00193. doi: 10.1042/BSR20150038.
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Functional TIM10 chaperone assembly is redox-regulated in vivo.功能性TIM10伴侣蛋白组装在体内受氧化还原调节。
J Biol Chem. 2004 Apr 30;279(18):18952-8. doi: 10.1074/jbc.M313045200. Epub 2004 Feb 18.
9
Mutation of conserved charged residues in mitochondrial TIM10 subunits precludes TIM10 complex assembly, but does not abolish growth of yeast cells.线粒体TIM10亚基中保守带电残基的突变会阻止TIM10复合体的组装,但不会消除酵母细胞的生长。
J Mol Biol. 2007 Aug 31;371(5):1315-24. doi: 10.1016/j.jmb.2007.06.025. Epub 2007 Jun 15.
10
Juxtaposition of the two distal CX3C motifs via intrachain disulfide bonding is essential for the folding of Tim10.通过链内二硫键结合使两个远端CX3C基序并列对Tim10的折叠至关重要。
J Biol Chem. 2003 Oct 3;278(40):38505-13. doi: 10.1074/jbc.M306027200. Epub 2003 Jul 25.

引用本文的文献

1
Protein import in mitochondria biogenesis: guided by targeting signals and sustained by dedicated chaperones.线粒体生物发生中的蛋白质导入:由靶向信号引导并由特定伴侣蛋白维持。
RSC Adv. 2021 Oct 1;11(51):32476-32493. doi: 10.1039/d1ra04497d. eCollection 2021 Sep 27.
2
Mitochondrial protein translocation machinery: From TOM structural biogenesis to functional regulation.线粒体蛋白转位机器:从 TOM 结构发生到功能调节。
J Biol Chem. 2022 May;298(5):101870. doi: 10.1016/j.jbc.2022.101870. Epub 2022 Mar 26.
3
Protein trafficking in the mitochondrial intermembrane space: mechanisms and links to human disease.
线粒体膜间隙中的蛋白质转运:机制及其与人类疾病的关联
Biochem J. 2017 Jul 12;474(15):2533-2545. doi: 10.1042/BCJ20160627.
4
Mitochondrial Tim9 protects Tim10 from degradation by the protease Yme1.线粒体Tim9保护Tim10不被蛋白酶Yme1降解。
Biosci Rep. 2015 Mar 17;35(3):e00193. doi: 10.1042/BSR20150038.
5
Folding and biogenesis of mitochondrial small Tim proteins.线粒体小分子 TIM 蛋白的折叠与生物发生。
Int J Mol Sci. 2013 Aug 13;14(8):16685-705. doi: 10.3390/ijms140816685.
6
Cytosolic thioredoxin system facilitates the import of mitochondrial small Tim proteins.细胞质硫氧还蛋白系统促进线粒体小 Tim 蛋白的输入。
EMBO Rep. 2012 Oct;13(10):916-22. doi: 10.1038/embor.2012.116. Epub 2012 Aug 10.
7
Probing early events in ferrous cytochrome c folding with time-resolved natural and magnetic circular dichroism spectroscopies.用时间分辨自然和圆二色光谱研究亚铁细胞色素 c 折叠的早期事件。
Curr Protein Pept Sci. 2009 Oct;10(5):464-75. doi: 10.2174/138920309789352001.
8
Zinc can play chaperone-like and inhibitor roles during import of mitochondrial small Tim proteins.在导入线粒体小Tim蛋白的过程中,锌可以发挥类似分子伴侣和抑制剂的作用。
J Biol Chem. 2009 Mar 13;284(11):6818-25. doi: 10.1074/jbc.M808691200. Epub 2008 Dec 31.
9
Complementing structural information of modular proteins with small angle neutron scattering and contrast variation.利用小角中子散射和对比变化补充模块化蛋白质的结构信息。
Eur Biophys J. 2008 Jun;37(5):603-11. doi: 10.1007/s00249-008-0278-z. Epub 2008 Feb 13.
10
Precursor oxidation by Mia40 and Erv1 promotes vectorial transport of proteins into the mitochondrial intermembrane space.Mia40和Erv1介导的前体氧化促进蛋白质向线粒体膜间隙的向量运输。
Mol Biol Cell. 2008 Jan;19(1):226-36. doi: 10.1091/mbc.e07-08-0814. Epub 2007 Oct 31.