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利用小角中子散射和对比变化补充模块化蛋白质的结构信息。

Complementing structural information of modular proteins with small angle neutron scattering and contrast variation.

作者信息

Grossmann J G, Callaghan A J, Marcaida M J, Luisi B F, Alcock F H, Tokatlidis K, Moulin M, Haertlein M, Timmins P

机构信息

Molecular Biophysics Group, STFC Daresbury Laboratory, Daresbury Science and Innovation Campus, Warrington, Cheshire WA4 AD, UK.

出版信息

Eur Biophys J. 2008 Jun;37(5):603-11. doi: 10.1007/s00249-008-0278-z. Epub 2008 Feb 13.

DOI:10.1007/s00249-008-0278-z
PMID:18270693
Abstract

Many macromolecules in the cell function by forming multi-component assemblies. We have applied the technique of small angle neutron scattering to study a nucleic acid-protein complex and a multi-protein complex. The results illustrate the versatility and applicability of the method to study macromolecular assemblies. The neutron scattering experiments, complementing X-ray solution scattering data, reveal that the conserved catalytic domain of RNase E, an essential ribonuclease in Escherichia coli (E. coli), undergoes a marked conformational change upon binding a 5'monophosphate-RNA substrate analogue. This provides the first evidence in support of an allosteric mechanism that brings about RNA substrate cleavage. Neutron contrast variation of the multi-protein TIM10 complex, a mitochondrial chaperone assembly comprising the subunits Tim9 and Tim10, has been used to determine a low-resolution shape reconstruction of the complex, highlighting the integral subunit organization. It shows characteristic features involving protrusions that could be assigned to the six subunits forming the complex.

摘要

细胞中的许多大分子通过形成多组分聚集体来发挥功能。我们应用小角中子散射技术研究了一种核酸 - 蛋白质复合物和一种多蛋白质复合物。结果说明了该方法在研究大分子聚集体方面的多功能性和适用性。中子散射实验对X射线溶液散射数据起到了补充作用,揭示了核糖核酸酶E(大肠杆菌中一种必需的核糖核酸酶)的保守催化结构域在结合5'单磷酸 - RNA底物类似物时会发生显著的构象变化。这为支持导致RNA底物切割的变构机制提供了首个证据。多蛋白质TIM10复合物是一种由Tim9和Tim10亚基组成的线粒体伴侣聚集体,通过中子对比变化已用于确定该复合物的低分辨率形状重建,突出了整体亚基组织。它显示出涉及突起的特征,这些突起可归因于形成该复合物的六个亚基。

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本文引用的文献

1
Mutation of conserved charged residues in mitochondrial TIM10 subunits precludes TIM10 complex assembly, but does not abolish growth of yeast cells.线粒体TIM10亚基中保守带电残基的突变会阻止TIM10复合体的组装,但不会消除酵母细胞的生长。
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Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover.
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Emerging applications of small angle solution scattering in structural biology.小角溶液散射在结构生物学中的新兴应用。
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A combined global and local approach to elucidate spatial organization of the Mycobacterial ParB-parS partition assembly.采用全局与局部相结合的方法阐明分枝杆菌 ParB-parS 分区组装的空间组织。
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大肠杆菌核糖核酸酶E催化结构域的结构及其对RNA周转的影响。
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Catalytic activation of multimeric RNase E and RNase G by 5'-monophosphorylated RNA.5'-单磷酸化RNA对多聚核糖核酸酶E和核糖核酸酶G的催化激活作用。
Proc Natl Acad Sci U S A. 2004 Jun 22;101(25):9211-6. doi: 10.1073/pnas.0401382101. Epub 2004 Jun 14.
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The structural basis of the TIM10 chaperone assembly.TIM10伴侣蛋白组装体的结构基础。
J Biol Chem. 2004 Apr 30;279(18):18959-66. doi: 10.1074/jbc.M313046200. Epub 2004 Feb 18.
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Quaternary structure and catalytic activity of the Escherichia coli ribonuclease E amino-terminal catalytic domain.大肠杆菌核糖核酸酶E氨基末端催化结构域的四级结构与催化活性
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Determination of the catalytic parameters of the N-terminal half of Escherichia coli ribonuclease E and the identification of critical functional groups in RNA substrates.大肠杆菌核糖核酸酶E N端结构域催化参数的测定及RNA底物中关键功能基团的鉴定
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Assembly of Tim9 and Tim10 into a functional chaperone.Tim9和Tim10组装成功能性伴侣蛋白。
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