Briollais Laurent, Tzontcheva Anjela, Bull Shelley
Division of Epidemiology and Biostatistics, Samuel Lunenfeld Research Institute, Mount Sinai Hospital, 600 University Avenue, Toronto, Ontario, Canada, M5G 1X5.
BMC Genet. 2003 Dec 31;4 Suppl 1(Suppl 1):S19. doi: 10.1186/1471-2156-4-S1-S19.
The data arising from a longitudinal familial study have a complex correlation structure that cannot be modeled using classical methods for the analysis of familial data at a single time point.
To fit the longitudinal systolic blood pressure (SBP) pedigree data arising from the Framingham Heart Study, we proposed to use multilevel modeling. That approach was used to distinguish multiple levels of information with individual repeated measurements (Level 1) being made within individuals (Level 2), and individuals clustered within pedigrees (Level 3). Residuals from the subject-specific and pedigree-specific regression models were summed both for the mean SBP and slope of SBP change over time, in order to define two new outcomes that were then used in a genome-wide linkage analysis.
Evidence for linkage for the two outcomes (mean SBP and slope) was found in several chromosomal regions with a maximum LOD score of 3.6 on chromosome 8 and 3.5 on chromosome 17 for the mean SBP, and 2.5 on chromosome 1 for SBP slope. However, the linkage on chromosome 8 was only detected when the sample was restricted to subjects between age 25 and 75 and with at least four exams (Cohort 1) or 3 exams (Cohort 2).
Multilevel modeling is a powerful approach to detect genes involved in complex traits when longitudinal data are available. It allows for complex hierarchical data structure to be taken into account and therefore, a better partitioning of random within-individual variation from other sources of variability (genetic or nongenetic).
一项纵向家族研究产生的数据具有复杂的相关结构,无法使用分析单个时间点家族数据的经典方法进行建模。
为了拟合来自弗雷明汉心脏研究的纵向收缩压(SBP)家系数据,我们建议使用多水平模型。该方法用于区分多个信息层次,个体重复测量(第1级)在个体内部进行(第2级),个体在家系中聚类(第3级)。针对平均SBP和SBP随时间变化的斜率,将个体特异性和家系特异性回归模型的残差相加,以定义两个新的结果,然后将其用于全基因组连锁分析。
在几个染色体区域发现了这两个结果(平均SBP和斜率)的连锁证据,平均SBP在8号染色体上的最大LOD评分为3.6,在17号染色体上为3.5,SBP斜率在1号染色体上为2.5。然而,仅当样本限于25至75岁且至少有四次检查的受试者(队列1)或三次检查的受试者(队列2)时,才在8号染色体上检测到连锁。
当有纵向数据可用时,多水平模型是检测参与复杂性状的基因的有力方法。它允许考虑复杂的分层数据结构,因此能够更好地将个体内部的随机变异与其他变异来源(遗传或非遗传)区分开来。