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病毒和哺乳动物基因表达中通过外显子定义和外显子序列对可变RNA剪接的调控。

Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression.

作者信息

Zheng Zhi-Ming

机构信息

HIV and AIDS Malignancy Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

出版信息

J Biomed Sci. 2004 May-Jun;11(3):278-94. doi: 10.1007/BF02254432.

DOI:10.1007/BF02254432
PMID:15067211
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2442652/
Abstract

Intron removal from a pre-mRNA by RNA splicing was once thought to be controlled mainly by intron splicing signals. However, viral and other eukaryotic RNA exon sequences have recently been found to regulate RNA splicing, polyadenylation, export, and nonsense-mediated RNA decay in addition to their coding function. Regulation of alternative RNA splicing by exon sequences is largely attributable to the presence of two major cis-acting elements in the regulated exons, the exonic splicing enhancer (ESE) and the suppressor or silencer (ESS). Two types of ESEs have been verified from more than 50 genes or exons: purine-rich ESEs, which are the more common, and non-purine-rich ESEs. In contrast, the sequences of ESSs identified in approximately 20 genes or exons are highly diverse and show little similarity to each other. Through interactions with cellular splicing factors, an ESE or ESS determines whether or not a regulated splice site, usually an upstream 3' splice site, will be used for RNA splicing. However, how these elements function precisely in selecting a regulated splice site is only partially understood. The balance between positive and negative regulation of splice site selection likely depends on the cis-element's identity and changes in cellular splicing factors under physiological or pathological conditions.

摘要

曾经认为,通过RNA剪接从pre-mRNA中去除内含子主要受内含子剪接信号控制。然而,最近发现病毒和其他真核RNA外显子序列除了其编码功能外,还能调节RNA剪接、聚腺苷酸化、输出以及无义介导的RNA降解。外显子序列对可变RNA剪接的调节很大程度上归因于受调节外显子中存在的两个主要顺式作用元件,即外显子剪接增强子(ESE)和抑制子或沉默子(ESS)。已从50多个基因或外显子中验证了两种类型的ESE:富含嘌呤的ESE(更为常见)和非富含嘌呤的ESE。相比之下,在大约20个基因或外显子中鉴定出的ESS序列高度多样,彼此之间几乎没有相似性。通过与细胞剪接因子相互作用,ESE或ESS决定了一个受调节的剪接位点(通常是上游3'剪接位点)是否会用于RNA剪接。然而,这些元件在选择受调节的剪接位点时如何精确发挥作用,目前仅部分得到了解。剪接位点选择的正调控和负调控之间的平衡可能取决于顺式元件的特性以及生理或病理条件下细胞剪接因子的变化。

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本文引用的文献

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A slow RNA polymerase II affects alternative splicing in vivo.缓慢的RNA聚合酶II在体内影响可变剪接。
Mol Cell. 2003 Aug;12(2):525-32. doi: 10.1016/j.molcel.2003.08.001.
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Valproic acid increases the SMN2 protein level: a well-known drug as a potential therapy for spinal muscular atrophy.丙戊酸可提高生存运动神经元2(SMN2)蛋白水平:一种作为脊髓性肌萎缩潜在疗法的知名药物。
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Characterization of disease-associated mutations affecting an exonic splicing enhancer and two cryptic splice sites in exon 13 of the cystic fibrosis transmembrane conductance regulator gene.囊性纤维化跨膜传导调节因子基因第13外显子中影响外显子剪接增强子和两个隐蔽剪接位点的疾病相关突变的特征分析
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A negative element in SMN2 exon 7 inhibits splicing in spinal muscular atrophy.SMN2基因第7外显子中的一个负性元件会抑制脊髓性肌萎缩症中的剪接过程。
Nat Genet. 2003 Aug;34(4):460-3. doi: 10.1038/ng1207.
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The CD44 alternative v9 exon contains a splicing enhancer responsive to the SR proteins 9G8, ASF/SF2, and SRp20.CD44可变v9外显子包含一个对SR蛋白9G8、ASF/SF2和SRp20有反应的剪接增强子。
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Mutations in tau gene exon 10 associated with FTDP-17 alter the activity of an exonic splicing enhancer to interact with Tra2 beta.与17号染色体相关额颞叶痴呆(FTDP - 17)相关的tau基因外显子10突变改变了外显子剪接增强子与Tra2β相互作用的活性。
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