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ClutrFree:聚类树可视化与解读

ClutrFree: cluster tree visualization and interpretation.

作者信息

Bidaut Ghislain, Ochs Michael F

机构信息

Division of Population Science, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA.

出版信息

Bioinformatics. 2004 Nov 1;20(16):2869-71. doi: 10.1093/bioinformatics/bth307. Epub 2004 May 14.

Abstract

UNLABELLED

ClutrFree facilitates the visualization and interpretation of clusters or patterns computed from microarray data through a graphical user interface that displays patterns, membership information of the genes and annotation statistics simultaneously. ClutrFree creates a tree linking the patterns based on similarity, permitting the navigation among patterns identified by different algorithms or by the same algorithm with different parameters, and aids the inferring of conclusions from a microarray experiment.

AVAILABILITY

The ClutrFree Java source code and compiled bytecode are available as a package under the GNU General Public License at http://bioinformatics.fccc.edu

摘要

未标注

ClutrFree通过一个图形用户界面促进对从微阵列数据计算得出的聚类或模式的可视化和解释,该界面可同时显示模式、基因的成员信息和注释统计数据。ClutrFree基于相似性创建一个链接模式的树状结构,允许在由不同算法或相同算法但不同参数识别出的模式之间进行导航,并有助于从微阵列实验中推断结论。

可用性

ClutrFree的Java源代码和编译后的字节码以GNU通用公共许可证下的包形式提供,可从http://bioinformatics.fccc.edu获取

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