• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

两亲分子双层膜中的孔隙:粗粒度分子动力学模拟与简单介观模型的比较

Pores in bilayer membranes of amphiphilic molecules: coarse-grained molecular dynamics simulations compared with simple mesoscopic models.

作者信息

Loison C, Mareschal M, Schmid F

机构信息

Max Planck Institut für Chemische Physik fester Stoffe, Nöthnitzer str. 40, D-01187 Dresden, Germany.

出版信息

J Chem Phys. 2004 Jul 22;121(4):1890-900. doi: 10.1063/1.1752884.

DOI:10.1063/1.1752884
PMID:15260741
Abstract

We investigate pores in fluid membranes by molecular dynamics simulations of an amphiphile-solvent mixture, using a molecular coarse-grained model. The amphiphilic membranes self-assemble into a lamellar stack of amphiphilic bilayers separated by solvent layers. We focus on the particular case of tensionless membranes, in which pores spontaneously appear because of thermal fluctuations. Their spatial distribution is similar to that of a random set of repulsive hard disks. The size and shape distribution of individual pores can be described satisfactorily by a simple mesoscopic model, which accounts only for a pore independent core energy and a line tension penalty at the pore edges. In particular, the pores are not circular: their shapes are fractal and have the same characteristics as those of two-dimensional ring polymers. Finally, we study the size-fluctuation dynamics of the pores, and compare the time evolution of their contour length to a random walk in a linear potential.

摘要

我们使用分子粗粒化模型,通过对两亲物 - 溶剂混合物进行分子动力学模拟来研究流体膜中的孔。两亲性膜自组装成由溶剂层分隔的两亲性双层的层状堆叠。我们关注无张力膜的特殊情况,在这种情况下,由于热涨落,孔会自发出现。它们的空间分布类似于一组随机的排斥性硬磁盘的分布。单个孔的尺寸和形状分布可以通过一个简单的介观模型得到令人满意的描述,该模型仅考虑与孔无关的核心能量以及孔边缘处的线张力惩罚。特别地,孔不是圆形的:它们的形状是分形的,并且具有与二维环形聚合物相同的特征。最后,我们研究了孔的尺寸涨落动力学,并将其轮廓长度的时间演化与线性势中的随机游走进行了比较。

相似文献

1
Pores in bilayer membranes of amphiphilic molecules: coarse-grained molecular dynamics simulations compared with simple mesoscopic models.两亲分子双层膜中的孔隙:粗粒度分子动力学模拟与简单介观模型的比较
J Chem Phys. 2004 Jul 22;121(4):1890-900. doi: 10.1063/1.1752884.
2
Nucleation free energy of pore formation in an amphiphilic bilayer studied by molecular dynamics simulations.通过分子动力学模拟研究两亲性双层膜中孔形成的成核自由能。
J Chem Phys. 2004 Dec 15;121(23):12060-6. doi: 10.1063/1.1815296.
3
Simulations of stable pores in membranes: system size dependence and line tension.膜中稳定孔的模拟:系统尺寸依赖性和线张力。
J Chem Phys. 2004 Oct 22;121(16):8014-20. doi: 10.1063/1.1796254.
4
Simulations of edge behavior in a mixed-lipid bilayer: fluctuation analysis.混合脂质双层中边缘行为的模拟:涨落分析
J Chem Phys. 2007 Jan 28;126(4):045105. doi: 10.1063/1.2430714.
5
Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.多肽主链中粗粒度和细粒度自由度所支配运动的时间尺度分离与耦合
J Chem Phys. 2007 Oct 21;127(15):155103. doi: 10.1063/1.2784200.
6
Surfactant solutions and porous substrates: spreading and imbibition.表面活性剂溶液与多孔基质:铺展与吸液
Adv Colloid Interface Sci. 2004 Nov 29;111(1-2):3-27. doi: 10.1016/j.cis.2004.07.007.
7
Mechanical properties of surfactant bilayer membranes from atomistic and coarse-grained molecular dynamics simulations.基于原子尺度和粗粒度分子动力学模拟的表面活性剂双层膜的力学性能
J Phys Chem B. 2005 Oct 27;109(42):19851-8. doi: 10.1021/jp054372b.
8
A molecular dynamics simulation study of buckyballs in water: atomistic versus coarse-grained models of C60.水中巴基球的分子动力学模拟研究:C60的原子模型与粗粒度模型
J Chem Phys. 2006 Jul 21;125(3):34502. doi: 10.1063/1.2217442.
9
Free energies of stable and metastable pores in lipid membranes under tension.张力作用下脂质膜中稳定和亚稳孔的自由能。
J Chem Phys. 2009 Nov 28;131(20):205101. doi: 10.1063/1.3266839.
10
Coarse-grained model for phospholipid/cholesterol bilayer.磷脂/胆固醇双层的粗粒度模型。
J Chem Phys. 2004 Nov 8;121(18):9156-65. doi: 10.1063/1.1803537.

引用本文的文献

1
The Transporter-Mediated Cellular Uptake and Efflux of Pharmaceutical Drugs and Biotechnology Products: How and Why Phospholipid Bilayer Transport Is Negligible in Real Biomembranes.药物和生物技术产品的转运体介导的细胞摄取和外排:为什么磷脂双层转运在真实生物膜中可以忽略不计。
Molecules. 2021 Sep 16;26(18):5629. doi: 10.3390/molecules26185629.
2
Free energy of hydrophilic and hydrophobic pores in lipid bilayers by free energy perturbation of a restraint.通过约束自由能摄动计算脂质双层亲水和疏水孔的自由能。
J Chem Phys. 2020 Aug 7;153(5):054101. doi: 10.1063/5.0016682.
3
The Relationship between fenestrations, sieve plates and rafts in liver sinusoidal endothelial cells.
肝窦内皮细胞中窗孔、筛板和筏的关系。
PLoS One. 2012;7(9):e46134. doi: 10.1371/journal.pone.0046134. Epub 2012 Sep 24.
4
A tool for the morphological analysis of mixtures of lipids and water in computer simulations.一种用于计算机模拟中分析脂质和水混合物的形态的工具。
J Mol Model. 2011 Jul;17(7):1755-66. doi: 10.1007/s00894-010-0858-6.
5
Simulations of skin barrier function: free energies of hydrophobic and hydrophilic transmembrane pores in ceramide bilayers.皮肤屏障功能的模拟:神经酰胺双层中疏水和亲水跨膜孔的自由能。
Biophys J. 2008 Nov 15;95(10):4763-71. doi: 10.1529/biophysj.108.138545. Epub 2008 Aug 15.
6
Ion transport across transmembrane pores.离子跨膜孔道的转运。
Biophys J. 2007 Jun 15;92(12):4209-15. doi: 10.1529/biophysj.106.101295. Epub 2007 Mar 23.
7
Field theoretic study of bilayer membrane fusion III: membranes with leaves of different composition.双层膜融合的场论研究III:具有不同组成叶层的膜。
Biophys J. 2007 Jun 1;92(11):3938-48. doi: 10.1529/biophysj.106.097063. Epub 2007 Mar 9.
8
Field theoretic study of bilayer membrane fusion: II. Mechanism of a stalk-hole complex.双层膜融合的场论研究:II. 柄-孔复合物的机制。
Biophys J. 2006 Feb 1;90(3):915-26. doi: 10.1529/biophysj.105.071092. Epub 2005 Nov 4.