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点突变的远程动态效应通过丝氨酸蛋白酶抑制剂抑肽酶c中的侧链进行传播。

Long-range dynamic effects of point mutations propagate through side chains in the serine protease inhibitor eglin c.

作者信息

Clarkson Michael W, Lee Andrew L

机构信息

Department of Biochemistry and Biophysics, School of Medicine, University of North Carolina, Chapel Hill, North Carolina 27599-7360, USA.

出版信息

Biochemistry. 2004 Oct 5;43(39):12448-58. doi: 10.1021/bi0494424.

Abstract

Long-range interactions are fundamental to protein behaviors such as cooperativity and allostery. In an attempt to understand the role protein flexibility plays in such interactions, the distribution of local fluctuations in a globular protein was monitored in response to localized, nonelectrostatic perturbations. Two valine-to-alanine mutations were introduced into the small serine protease inhibitor eglin c, and the (15)N and (2)H NMR spin relaxation properties of these variants were analyzed in terms of the Lipari-Szabo dynamics formalism and compared to those of the wild type. Significant changes in picosecond to nanosecond dynamics were observed in side chains located as much as 13 A from the point of mutation. Additionally, those residues experiencing altered dynamics appear to form contiguous surfaces within the protein. In the case of V54A, the large-to-small mutation results in a rigidification of connected residues, even though this mutation decreases the global stability. These findings suggest that dynamic perturbations arising from single mutations may propagate away from the perturbed site through networks of interacting side chains. That this is observed in eglin c, a classically nonallosteric protein, suggests that such behavior will be observed in many, if not all, globular proteins. Differences in behavior between the two mutants suggest that dynamic responses will be context-dependent.

摘要

长程相互作用对于蛋白质的协同性和别构效应等行为至关重要。为了理解蛋白质柔性在这类相互作用中所起的作用,研究人员监测了球状蛋白质中局部波动的分布,以响应局部的非静电扰动。在小丝氨酸蛋白酶抑制剂依格林c中引入了两个缬氨酸到丙氨酸的突变,并根据利帕里 - 萨博动力学形式体系分析了这些变体的(15)N和(2)H NMR自旋弛豫特性,并与野生型进行了比较。在距离突变点多达13埃的侧链中观察到皮秒到纳秒动力学的显著变化。此外,那些动力学发生改变的残基似乎在蛋白质内形成了连续的表面。在V54A的情况下,尽管这种突变降低了整体稳定性,但从大到小的突变导致相连残基的刚性增强。这些发现表明,单个突变引起的动态扰动可能通过相互作用的侧链网络从扰动位点传播开来。在经典的非别构蛋白依格林c中观察到这一点,表明在许多(如果不是全部)球状蛋白质中都将观察到这种行为。两个突变体之间行为的差异表明动态响应将取决于具体情况。

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