Mungikar Amol A, Forciniti Daniel
Chemical and Biological Engineering Department, University of Missouri-Rolla, Rolla, Missouri 65409, USA.
Biomacromolecules. 2004 Nov-Dec;5(6):2147-59. doi: 10.1021/bm049808s.
Monte Carlo simulations were performed to study the conformational changes of negatively charged model peptides dissolved in water adsorbed onto charged surfaces. 8-, 16-, and 20-residues peptides were used, each of them consisted of repeating diblock units of aspartic acid (ASP, polar amino acid) and isoleucine (ILE, nonpolar amino acid) residues. We found that a water patch was retained at the charged surface, separating the peptide from it. We believed that these water molecules were primarily responsible for giving a particular orientation to the peptide at the surface. Water did play a role to some extent in the structural stability of the 8-residues peptide. However, for higher chain lengths (16-residues and 20-residues), the intrinsic hydrogen-bonding network (or intrinsic structural stability) showed a predominant effect over hydrophobic dehydration for the stability of the peptide at the surface.
进行了蒙特卡罗模拟,以研究溶解在水中并吸附在带电表面上的带负电荷模型肽的构象变化。使用了8、16和20个残基的肽,它们均由天冬氨酸(ASP,极性氨基酸)和异亮氨酸(ILE,非极性氨基酸)残基的重复双嵌段单元组成。我们发现,在带电表面保留了一个水斑,将肽与表面隔开。我们认为,这些水分子主要负责使肽在表面呈现特定的取向。水在一定程度上对8个残基肽的结构稳定性起到了作用。然而,对于更长的链长(16个残基和20个残基),内在氢键网络(或内在结构稳定性)在肽在表面的稳定性方面,相对于疏水脱水表现出了主导作用。