Castañeda Alexandra, McEwen Juan, Hidalgo Marylin, Castañeda Elizabeth
Grupo de Microbiología, Instituto Nacional de Salud, Bogotá, DC, Colombia.
Biomedica. 2004 Sep;24(3):324-31.
The genus Cryptococcus encompasses 38 species, but only 3 are associated with disease in humans and animals, Cryptococcus laurentii, Cryptococcus albidus and Cryptococcus neoformans. The last one is the most frequently reported. The disease is acquired by the inhalation of infectious propagules present in the environment. The habitat has been established using extraction techniques with buffer supplemented with antibiotics and plating in selective media. The aim of this work was to evaluate several DNA extraction techniques for Cryptocococus spp. from environmental samples. The control isolates were C. neoformans, C. albidus, C. laurentii and Paracoccidiodes brasiliensis. We also used vermiculita and soil samples contaminated with different yeast concentrations (10 to 10(6) cells/g) and samples naturally contaminated with C. neoformans. DNA was extracted with physical and chemical methods and with a commercial kit, and the DNA was purified with agarose blocks and silica columns. For the PCR amplification we used the CN4-CN5 primers, which are specific for C. neoformans. Only the commercial kit allowed DNA extraction and amplification from contaminated soil samples up to a concentration of 10 cells/g and from one sample naturally colonized. With this work we extracted and amplified DNA from Cryptococcus spp. from environmental samples with appropriate PCR specificity, it will be a tool to establish the ecological areas of C. neoformans in our country.
隐球菌属包含38个种,但只有3种与人和动物疾病相关,即罗伦隐球菌、浅白隐球菌和新生隐球菌。其中最后一种是最常报道的。该疾病通过吸入环境中存在的感染性繁殖体而获得。已使用添加抗生素的缓冲液提取技术并接种于选择性培养基来确定其栖息地。本研究的目的是评估从环境样本中提取新型隐球菌属DNA的几种技术。对照菌株为新生隐球菌、浅白隐球菌、罗伦隐球菌和巴西副球孢子菌。我们还使用了被不同酵母浓度(10至10⁶个细胞/克)污染的蛭石和土壤样本以及自然被新生隐球菌污染的样本。采用物理和化学方法以及商业试剂盒提取DNA,并用琼脂糖块和硅胶柱纯化DNA。对于PCR扩增,我们使用了对新生隐球菌具有特异性的CN4 - CN5引物。只有商业试剂盒能够从污染土壤样本中提取DNA并进行扩增,样本浓度可达10个细胞/克,且能从一个自然定殖的样本中提取。通过这项工作,我们从环境样本中提取并扩增了新型隐球菌属的DNA,具有适当的PCR特异性,这将成为确定我国新生隐球菌生态区域的一种工具。