Ozdirekcan Suat, Rijkers Dirk T S, Liskamp Rob M J, Killian J Antoinette
Department of Biochemistry of Membranes, Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.
Biochemistry. 2005 Jan 25;44(3):1004-12. doi: 10.1021/bi0481242.
To gain insight into the parameters that determine the arrangement of proteins in membranes, (2)H NMR experiments were performed to analyze tilt and rotation angles of membrane-spanning alpha-helical model peptides upon incorporation in diacylphosphatidylcholine bilayers with varying thickness. The peptides consisted of the sequence acetyl-GW(2)(LA)(8)LW(2)A-NH(2) (WALP23) and analogues thereof, in which the interfacial Trp residues were replaced by Lys (KALP23) and/or the hydrophobic sequence was replaced by Leu (WLP23 and KLP23). The peptides were synthesized with a single deuterium-labeled alanine at four different positions along the hydrophobic segment. For all peptides a small but systematic increase in tilt angle was observed upon decreasing the bilayer thickness. However, significantly larger tilt angles were obtained for the Lys-flanked KALP23 than for the Trp-flanked WALP23, suggesting that interfacial anchoring interactions of Trp may inhibit tilting. Increasing the hydrophobicity resulted in an increase in tilt angle for the Trp-flanked analogue only. For all peptides the maximum tilt angle obtained was remarkably small (less than 12 degrees ), suggesting that further tilting is inhibited, most likely due to unfavorable packing of lipids around a tilted helix. The results furthermore showed that the direction of tilt is determined almost exclusively by the flanking residues: Trp- and Lys-flanked peptides were found to have very different rotation angles, which were influenced significantly neither by hydrophobicity of the peptides nor by the extent of hydrophobic mismatch. Finally, very small changes in the side chain angles of the deuterated alanine probes were observed in Trp-flanked peptides, suggesting that these peptides may decrease their hydrophobic length to help them to adapt to thin membranes.
为深入了解决定蛋白质在膜中排列方式的参数,进行了(2)H NMR实验,以分析跨膜α-螺旋模型肽在掺入不同厚度的二酰基磷脂酰胆碱双层膜时的倾斜角和旋转角。这些肽由乙酰基-GW(2)(LA)(8)LW(2)A-NH(2)(WALP23)序列及其类似物组成,其中界面处的色氨酸残基被赖氨酸取代(KALP23)和/或疏水序列被亮氨酸取代(WLP23和KLP23)。这些肽在疏水片段的四个不同位置合成了单个氘标记的丙氨酸。对于所有肽,随着双层膜厚度的减小,观察到倾斜角有小但系统性的增加。然而,与色氨酸侧翼的WALP23相比,赖氨酸侧翼的KALP23获得的倾斜角明显更大,这表明色氨酸的界面锚定相互作用可能抑制倾斜。仅对于色氨酸侧翼的类似物,增加疏水性会导致倾斜角增加。对于所有肽,获得的最大倾斜角非常小(小于12度),这表明进一步的倾斜受到抑制,最可能是由于倾斜螺旋周围脂质的不利堆积。结果还表明,倾斜方向几乎完全由侧翼残基决定:发现色氨酸和赖氨酸侧翼的肽具有非常不同的旋转角,这些旋转角既不受肽的疏水性影响,也不受疏水错配程度的显著影响。最后,在色氨酸侧翼的肽中观察到氘代丙氨酸探针侧链角度的非常小的变化,这表明这些肽可能会缩短其疏水长度以帮助它们适应薄的膜。