Gofman Yana, Haliloglu Turkan, Ben-Tal Nir
Helmholtz-Zentrum, 21502 Geesthacht, Germany ; The Department of Biochemistry and Molecular Biology, George S. Wise Faculty of Life Sciences, Tel-Aviv University, 69978 Tel-Aviv, Israel.
Chemical Engineering Department, Polymer Research Center, Life Sciences and Technologies Research Center, Bogazici University, 34342 Bebek-Istanbul, Turkey.
J Chem Theory Comput. 2012 Aug 14;8(8):2896-2904. doi: 10.1021/ct300128x. Epub 2012 Jun 6.
Hydrophobic helical peptides interact with lipid bilayers in various modes, determined by the match between the length of the helix's hydrophobic core and the thickness of the hydrocarbon region of the bilayer. For example, long helices may tilt with respect to the membrane normal to bury their hydrophobic cores in the membrane, and the lipid bilayer may stretch to match the helix length. Recent molecular dynamics simulations and potential of mean force calculations have shown that some TM helices whose lengths are equal to, or even shorter than, the bilayer thickness may also tilt. The tilt is driven by a gain in the helix precession entropy, which compensates for the free energy penalty resulting from membrane deformation. Using this free energy balance, we derived theoretically an equation of state, describing the dependence of the tilt on the helix length and membrane thickness. To this end, we conducted coarse-grained Monte Carlo simulations of the interaction of helices of various lengths with lipid bilayers of various thicknesses, reproducing and expanding the previous molecular dynamics simulations. Insight from the simulations facilitated the derivation of the theoretical model. The tilt angles calculated using the theoretical model agree well with our simulations and with previous calculations and measurements.
疏水性螺旋肽以多种方式与脂质双层相互作用,这取决于螺旋疏水核心的长度与双层烃区域厚度之间的匹配程度。例如,长螺旋可能相对于膜法线倾斜,以便将其疏水核心埋入膜中,并且脂质双层可能会伸展以匹配螺旋长度。最近的分子动力学模拟和平均力势计算表明,一些长度等于甚至短于双层厚度的跨膜螺旋也可能倾斜。这种倾斜是由螺旋进动熵的增加驱动的,它补偿了膜变形导致的自由能损失。利用这种自由能平衡,我们从理论上推导出了一个状态方程,描述了倾斜对螺旋长度和膜厚度的依赖性。为此,我们对不同长度的螺旋与不同厚度的脂质双层之间的相互作用进行了粗粒度蒙特卡罗模拟,重现并扩展了先前的分子动力学模拟。模拟得到的见解有助于理论模型的推导。使用理论模型计算出的倾斜角与我们的模拟结果以及先前的计算和测量结果吻合得很好。