Wales David J
University Chemical Laboratories, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK.
Philos Trans A Math Phys Eng Sci. 2005 Feb 15;363(1827):357-75; discussion 375-7. doi: 10.1098/rsta.2004.1497.
The potential energy surface (PES) underlies most calculations of structure, dynamics and thermodynamics in molecular science. In this contribution connections between the topology of the PES and observable properties are developed for a coarse-grained model of virus capsid self-assembly. The model predicts that a thermodynamically stable, kinetically accessible icosahedral shell exists for pentameric building blocks of the right shape: not too flat and not too spiky. The structure of the corresponding PES is probably common to other systems where directed searches avoid Levinthal's paradox, such as 'magic number' clusters, protein folding and crystallization.
势能面(PES)是分子科学中大多数结构、动力学和热力学计算的基础。在本论文中,针对病毒衣壳自组装的粗粒度模型,建立了PES拓扑结构与可观测性质之间的联系。该模型预测,对于形状合适的五聚体构建块,存在一个热力学稳定且动力学上可及的二十面体壳层:既不太扁平也不太尖锐。相应PES的结构可能与其他避免莱文索尔悖论的定向搜索系统相同,例如“幻数”团簇、蛋白质折叠和结晶。