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完整核糖体的质谱分析。

Mass spectrometry of intact ribosomes.

作者信息

Videler Hortense, Ilag Leopold L, McKay Adam R C, Hanson Charlotte L, Robinson Carol V

机构信息

The University Chemical Laboratory, Lensfield Road, Cambridge CB2 1EW, UK.

出版信息

FEBS Lett. 2005 Feb 7;579(4):943-7. doi: 10.1016/j.febslet.2004.12.003.

DOI:10.1016/j.febslet.2004.12.003
PMID:15680979
Abstract

The ability to maintain intact ribosomes in the mass spectrometer has enabled research into their changes in conformation and interactions. In the mass spectrometer, it is possible to induce dissociation of proteins from the intact ribosome and, in conjunction with atomic structures, to understand the factors governing their release. We have applied this knowledge to interpret the structural basis for release of proteins from ribosomes for which no high resolution structures are available, such as complexes with elongation factor G and ribosomes from yeast. We also describe how improvements in technology and understanding have widened the scope of our research and lead to dramatic improvements in quality and information available from spectra of intact ribosomes.

摘要

在质谱仪中保持核糖体完整的能力,使得对其构象变化和相互作用的研究成为可能。在质谱仪中,可以诱导蛋白质从完整核糖体上解离,并结合原子结构,了解控制其释放的因素。我们已运用这一知识来解释那些没有高分辨率结构的核糖体释放蛋白质的结构基础,比如与延伸因子G的复合物以及酵母核糖体。我们还描述了技术改进和认识的提高如何拓宽了我们的研究范围,并使完整核糖体光谱的质量和可用信息得到显著改善。

相似文献

1
Mass spectrometry of intact ribosomes.完整核糖体的质谱分析。
FEBS Lett. 2005 Feb 7;579(4):943-7. doi: 10.1016/j.febslet.2004.12.003.
2
Atomic structures of the eukaryotic ribosome.真核生物核糖体的原子结构。
Trends Biochem Sci. 2012 May;37(5):189-98. doi: 10.1016/j.tibs.2012.02.007. Epub 2012 Mar 20.
3
Mass measurements of increased accuracy resolve heterogeneous populations of intact ribosomes.更高精度的质量测量解析了完整核糖体的异质群体。
J Am Chem Soc. 2006 Sep 6;128(35):11433-42. doi: 10.1021/ja061468q.
4
The ribosome through the looking glass.透过镜子看核糖体。
Angew Chem Int Ed Engl. 2003 Aug 4;42(30):3464-86. doi: 10.1002/anie.200200544.
5
The structural basis of large ribosomal subunit function.大核糖体亚基功能的结构基础。
Annu Rev Biochem. 2003;72:813-50. doi: 10.1146/annurev.biochem.72.110601.135450.
6
Mass spectrometry of ribosomes and ribosomal subunits.核糖体及核糖体亚基的质谱分析。
Proc Natl Acad Sci U S A. 1998 Jun 23;95(13):7391-5. doi: 10.1073/pnas.95.13.7391.
7
Detection and selective dissociation of intact ribosomes in a mass spectrometer.质谱仪中完整核糖体的检测与选择性解离
Proc Natl Acad Sci U S A. 2000 May 9;97(10):5185-90. doi: 10.1073/pnas.97.10.5185.
8
[The structural changes in the ribosome during the elongation cycle].[延伸循环期间核糖体的结构变化]
Mol Biol (Mosk). 2006 Sep-Oct;40(5):755-68.
9
Molecular contacts between antibiotics and the 30S ribosomal particle.抗生素与30S核糖体颗粒之间的分子接触。
Methods Enzymol. 2006;415:180-202. doi: 10.1016/S0076-6879(06)15012-0.
10
[Ribosomal structure: RNA-protein and protein-protein interactions].[核糖体结构:RNA-蛋白质和蛋白质-蛋白质相互作用]
Mol Biol (Mosk). 1998 Sep-Oct;32(5):773-81.

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Boundaries of mass resolution in native mass spectrometry.原生质谱中质量分辨率的界限
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Mechanism and rates of exchange of L7/L12 between ribosomes and the effects of binding EF-G.核糖体之间 L7/L12 的交换机制和速率以及结合 EF-G 的影响。
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Analyzing large protein complexes by structural mass spectrometry.通过结构质谱分析大型蛋白质复合物。
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Mass spectrometry defines the stoichiometry of ribosomal stalk complexes across the phylogenetic tree.质谱法定义了核糖体柄复合物在系统发育树上的化学计量。
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How far can we go with structural mass spectrometry of protein complexes?蛋白质复合物的结构质谱分析能走多远?
J Am Soc Mass Spectrom. 2010 Apr;21(4):487-500. doi: 10.1016/j.jasms.2009.12.017. Epub 2010 Jan 4.
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Current limitations in native mass spectrometry based structural biology.基于天然质谱的结构生物学的当前局限性。
J Am Soc Mass Spectrom. 2010 Jun;21(6):971-8. doi: 10.1016/j.jasms.2009.12.010. Epub 2010 Jan 4.
7
Biophysical studies of bacterial ribosome assembly.细菌核糖体组装的生物物理学研究。
Curr Opin Struct Biol. 2008 Jun;18(3):299-304. doi: 10.1016/j.sbi.2008.05.001. Epub 2008 Jun 7.
8
Interactions of Kid-Kis toxin-antitoxin complexes with the parD operator-promoter region of plasmid R1 are piloted by the Kis antitoxin and tuned by the stoichiometry of Kid-Kis oligomers.Kid-Kis毒素-抗毒素复合物与质粒R1的parD操纵子-启动子区域的相互作用由Kis抗毒素引导,并由Kid-Kis寡聚体的化学计量调控。
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Donor-strand exchange in chaperone-assisted pilus assembly proceeds through a concerted beta strand displacement mechanism.伴侣蛋白辅助菌毛组装中的供体链交换通过协同的β链置换机制进行。
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