De Debojyoti, Dutta Debajyoti, Kundu Moloy, Mahato Sourav, Schiavone Marc T, Chaudhuri Surabhi, Giri Ashok, Gupta Vidya, Bhattacharya Sanjoy K
Department of Ophthalmic Research, Cleveland Clinic Foundation, Area I31, 9500 Euclid Avenue, Cleveland, Ohio, 44195, USA.
Microb Cell Fact. 2005 Feb 2;4(1):5. doi: 10.1186/1475-2859-4-5.
Carbon dioxide fixation bioprocess in reactors necessitates recycling of D-ribulose1,5-bisphosphate (RuBP) for continuous operation. A radically new close loop of RuBP regenerating reactor design has been proposed that will harbor enzyme-complexes instead of purified enzymes. These reactors will need binders enabling selective capture and release of sugar and intermediate metabolites enabling specific conversions during regeneration. In the current manuscript we describe properties of proteins that will act as potential binders in RuBP regeneration reactors. RESULTS: We demonstrate specific binding of 3-phosphoglycerate (3PGA) and 3-phosphoglyceraldehyde (3PGAL) from sugar mixtures by inactive mutant of yeast enzymes phosphoglycerate mutase and enolase. The reversibility in binding with respect to pH and EDTA has also been shown. No chemical conversion of incubated sugars or sugar intermediate metabolites were found by the inactive enzymatic proteins. The dissociation constants for sugar metabolites are in the micromolar range, both proteins showed lower dissociation constant (Kd) for 3-phosphoglycerate (655-796 muM) compared to 3-phosphoglyceraldehyde (822-966 muM) indicating higher affinity for 3PGA. The proteins did not show binding to glucose, sucrose or fructose within the sensitivity limits of detection. Phosphoglycerate mutase showed slightly lower stability on repeated use than enolase mutants. CONCLUSIONS: The sugar and their intermediate metabolite binders may have a useful role in RuBP regeneration reactors. The reversibility of binding with respect to changes in physicochemical factors and stability when subjected to repeated changes in these conditions are expected to make the mutant proteins candidates for in-situ removal of sugar intermediate metabolites for forward driving of specific reactions in enzyme-complex reactors.
反应器中的二氧化碳固定生物过程需要循环利用1,5 - 二磷酸核酮糖(RuBP)以实现连续运行。已提出一种全新的RuBP再生反应器设计闭环,其中将容纳酶复合物而非纯化酶。这些反应器将需要能够选择性捕获和释放糖类及中间代谢物的结合剂,以在再生过程中实现特定转化。在本手稿中,我们描述了将在RuBP再生反应器中充当潜在结合剂的蛋白质的特性。
我们证明了酵母酶磷酸甘油酸变位酶和烯醇酶的无活性突变体可从糖混合物中特异性结合3 - 磷酸甘油酸(3PGA)和3 - 磷酸甘油醛(3PGAL)。还展示了结合相对于pH和EDTA的可逆性。无活性的酶蛋白未发现对孵育的糖类或糖中间代谢物进行化学转化。糖代谢物的解离常数在微摩尔范围内,与3 - 磷酸甘油醛(822 - 966μM)相比,两种蛋白质对3 - 磷酸甘油酸的解离常数(Kd)更低(655 - 796μM),表明对3PGA具有更高的亲和力。在检测灵敏度范围内,这些蛋白质未显示与葡萄糖、蔗糖或果糖结合。磷酸甘油酸变位酶在重复使用时的稳定性略低于烯醇酶突变体。
糖类及其中间代谢物结合剂可能在RuBP再生反应器中发挥有用作用。结合相对于物理化学因素变化的可逆性以及在这些条件下反复变化时的稳定性,有望使突变蛋白成为原位去除糖中间代谢物以推动酶复合物反应器中特定反应正向进行的候选者。