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用于估计跨国遗传相关性的数据子集策略。

Data subsetting strategies for estimation of across-country genetic correlations.

作者信息

Jorjani H, Emanuelson U, Fikse W F

机构信息

Interbull Centre, Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Box 7023, S-75007 Uppsala, Sweden.

出版信息

J Dairy Sci. 2005 Mar;88(3):1214-24. doi: 10.3168/jds.S0022-0302(05)72788-0.

Abstract

International genetic evaluation of dairy cattle requires estimation of genetic correlations among populations to account for genotype-environment interaction. Simultaneous estimation of across-country genetic correlations among all populations of a widespread breed, such as the Holstein breed is, however, hampered by connectedness problems and computational challenges. The purpose of this study was to examine the effects of using bulls with across-country, balanced distribution of daughters on estimates of genetic correlations. For this purpose, dairy cattle populations undergoing selection in 6 countries were simulated. Two population-size settings were used. In the small population-size setting (S-populations), the 6 simulated countries had 2000 cows and 20 young progeny testing bulls per generation. In the larger population-size setting (L-populations), the 6 simulated countries had between 2000 and 64,000 cows and 20 to 640 young progeny testing bulls per generation. The simulated (true) across-country genetic correlations, depending on the country combination, varied between 0.5 and 0.9. Simulations comprised a base population and 10 generations and were replicated 16 times. Results for the S-populations were not conclusive. For the L-populations, results indicated that by use of data from a relatively small subset of bulls with distribution of daughters balanced across countries, genetic correlations could be estimated with very small bias (overall average of absolute value of bias across replicates was 0.03 for the L-populations). The suggested bull subsetting strategy would allow simultaneous estimation of across-country genetic correlations to be computed for a larger number of countries and in a shorter window of time than was possible previously.

摘要

奶牛的国际遗传评估需要估计群体间的遗传相关性,以考虑基因型与环境的相互作用。然而,对于像荷斯坦奶牛这样广泛分布的品种,要同时估计所有群体间的跨国遗传相关性,会受到连通性问题和计算挑战的阻碍。本研究的目的是检验使用女儿在各国分布均衡的公牛对遗传相关性估计的影响。为此,模拟了6个国家正在进行选育的奶牛群体。使用了两种群体规模设置。在小群体规模设置(S群体)中,6个模拟国家每个世代有2000头母牛和20头年轻的后裔测定公牛。在大群体规模设置(L群体)中,6个模拟国家每个世代有2000至64000头母牛和20至640头年轻的后裔测定公牛。模拟的(真实的)跨国遗传相关性,因国家组合不同,在0.5至0.9之间变化。模拟包括一个基础群体和10个世代,重复16次。S群体的结果尚无定论。对于L群体,结果表明,通过使用来自女儿在各国分布均衡的相对较小公牛子集的数据,可以以非常小的偏差估计遗传相关性(L群体重复实验中偏差绝对值的总体平均值为0.03)。所建议的公牛子集策略将使得能够在比以前更短的时间窗口内,为更多国家同时计算跨国遗传相关性。

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