Suppr超能文献

离子与有限长度聚电解质结合的静电相关性和涨落

Electrostatic correlations and fluctuations for ion binding to a finite length polyelectrolyte.

作者信息

Tan Zhi-Jie, Chen Shi-Jie

机构信息

Department of Physics and Astronomy and Department of Biochemistry, University of Missouri, Columbia, MO 65211, USA.

出版信息

J Chem Phys. 2005 Jan 22;122(4):44903. doi: 10.1063/1.1842059.

Abstract

A statistical mechanical model is presented which explicitly accounts for the fluctuations, the electrostatic, and the excluded volume correlations for ions bound to a polyelectrolyte such as DNA. The method can be employed to treat a wide range of ionic conditions including multivalent ions. The microscopic framework of the theory permits the use of realistic finite length and grooved structural model for the polyelectrolyte and modeling of the finite size of the bound ions. Test against Monte Carlo simulations suggests that the theory can give accurate predictions for the ion distribution and the thermodynamic properties. For multivalent ions, the theory makes improved predictions as compared with the mean-field approach. Moreover, for long polyelectrolyte and dilute salt concentration, the theory predicts ion binding properties that agree with the counterion condensation theory.

摘要

提出了一种统计力学模型,该模型明确考虑了与诸如DNA等聚电解质结合的离子的涨落、静电和排除体积相关性。该方法可用于处理包括多价离子在内的各种离子条件。该理论的微观框架允许使用聚电解质的实际有限长度和带槽结构模型,并对结合离子的有限尺寸进行建模。与蒙特卡罗模拟的对比测试表明,该理论可以对离子分布和热力学性质给出准确的预测。对于多价离子,与平均场方法相比,该理论给出了改进的预测。此外,对于长聚电解质和稀盐浓度,该理论预测的离子结合性质与反离子凝聚理论一致。

相似文献

4
Counterion correlations and attraction between like-charged macromolecules.抗衡离子相关性与同电荷大分子之间的吸引力。
Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Jul;64(1 Pt 1):011804. doi: 10.1103/PhysRevE.64.011804. Epub 2001 Jun 25.
5
Effects of counterion fluctuations in a polyelectrolyte brush.聚电解质刷中抗衡离子波动的影响。
Eur Phys J E Soft Matter. 2004 Apr;13(4):335-44. doi: 10.1140/epje/i2003-10077-7.
6
Dressed counterions: polyvalent and monovalent ions at charged dielectric interfaces.着装反离子:带电介电界面处的多价和单价离子
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Jul;84(1 Pt 1):011502. doi: 10.1103/PhysRevE.84.011502. Epub 2011 Jul 5.
7
Phase diagram of charged dumbbells: a random phase approximation approach.
Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Aug;70(2 Pt 1):021504. doi: 10.1103/PhysRevE.70.021504. Epub 2004 Aug 13.

引用本文的文献

5
RNA-ligand molecular docking: advances and challenges.RNA-配体分子对接:进展与挑战
Wiley Interdiscip Rev Comput Mol Sci. 2022 May-Jun;12(3). doi: 10.1002/wcms.1571. Epub 2021 Aug 16.
7
Temperature-dependent elastic properties of DNA.DNA的温度依赖性弹性特性
Biophys Rep (N Y). 2022 Aug 5;2(3):100067. doi: 10.1016/j.bpr.2022.100067. eCollection 2022 Sep 14.
10
Measurement of the specific and non-specific binding energies of Mg to RNA.测量 Mg 与 RNA 的特异性和非特异性结合能。
Biophys J. 2022 Aug 16;121(16):3010-3022. doi: 10.1016/j.bpj.2022.07.020. Epub 2022 Jul 21.

本文引用的文献

2
Ionic effects beyond Poisson-Boltzmann theory.超越泊松-玻尔兹曼理论的离子效应。
Annu Rev Phys Chem. 1999;50:145-65. doi: 10.1146/annurev.physchem.50.1.145.
3
Adsorption of monovalent and multivalent cations and anions on DNA molecules.单价和多价阳离子及阴离子在DNA分子上的吸附作用。
Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Dec;68(6 Pt 1):061903. doi: 10.1103/PhysRevE.68.061903. Epub 2003 Dec 15.
9
A thermodynamic framework for Mg2+ binding to RNA.镁离子与RNA结合的热力学框架。
Proc Natl Acad Sci U S A. 2001 Oct 23;98(22):12456-61. doi: 10.1073/pnas.221234598.
10
Electrostatics of nanosystems: application to microtubules and the ribosome.纳米系统的静电学:在微管和核糖体中的应用。
Proc Natl Acad Sci U S A. 2001 Aug 28;98(18):10037-41. doi: 10.1073/pnas.181342398. Epub 2001 Aug 21.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验