Jemioła-Rzemińska Małgorzata, Pasenkiewicz-Gierula Marta, Strzałka Kazimierz
Department of Plant Physiology and Biochemistry, Faculty of Biotechnology, Jagiellonian University, ul. Gronostajowa 7, 30-387 Kraków, Poland.
Chem Phys Lipids. 2005 May;135(1):27-37. doi: 10.1016/j.chemphyslip.2005.01.006. Epub 2005 Feb 19.
A molecular dynamics (MD) simulation of the fully hydrated bilayer made of 1-palmitoyl-2-oleoyl-phosphatidylcholine (POPC) and containing beta-carotene (beta-Car) molecules was carried out as a complementary approach to experimental techniques to investigate the orientation of beta-Car in the lipid membrane as well as its influence on the bilayer properties. The bilayer reached thermal equilibrium after 1200 ps of MD simulation and the productive run was carried out for 2800 ps. The results indicate that the carotene rings are located in the region occupied by the carbonyl groups of the POPC gamma-chain with no trace of penetration towards the centre of the bilayer. Carotene exhibits an ordering effect on both the beta- and the gamma-chain. While the fully saturated gamma-chain is affected evenly along, the order of the mono-unsaturated beta-chain is modified mainly below the double bond. In general, a high value of the order parameter and the chain tilt in the range from 11.4 degrees to 26.7 degrees were observed for the beta-Car molecules. However, for chain segment adjacent to methyl groups the value of the order parameter is low and the tilt angle is close to 75 degrees . Moreover, the probability of trans conformation being generally close to 1.0 along the beta-Car chain is reduced for these segments. Our MD simulation study suggests two pools of the preferential orientation of beta-Car: a slightly bent structure corresponding to a small chain tilt angle and a rather stretched structure that corresponds to a higher chain tilt. The results are discussed in the light of experimental findings.
对由1-棕榈酰-2-油酰基磷脂酰胆碱(POPC)制成并含有β-胡萝卜素(β-Car)分子的完全水合双层进行了分子动力学(MD)模拟,作为实验技术的补充方法,以研究β-Car在脂质膜中的取向及其对双层性质的影响。在1200 ps的MD模拟后,双层达到热平衡,并进行了2800 ps的生产运行。结果表明,胡萝卜素环位于POPCγ链羰基占据的区域,没有向双层中心渗透的迹象。胡萝卜素对β链和γ链都表现出有序化作用。虽然完全饱和的γ链沿其均匀受到影响,但单不饱和β链的有序性主要在双键下方发生改变。一般来说,观察到β-Car分子的序参数值较高,链倾斜度在11.4度至26.7度范围内。然而,对于与甲基相邻的链段,序参数值较低,倾斜角接近75度。此外,这些链段沿β-Car链的反式构象概率通常接近1.0的情况有所降低。我们的MD模拟研究表明β-Car存在两种优先取向:一种是对应小链倾斜角的微弯结构,另一种是对应较高链倾斜度的相当伸展的结构。根据实验结果对这些结果进行了讨论。