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一种用于由牛顿轨迹定义的反应路径的增长弦方法。

A growing string method for the reaction pathway defined by a Newton trajectory.

作者信息

Quapp Wolfgang

机构信息

Mathematical Institute, University of Leipzig, Germany.

出版信息

J Chem Phys. 2005 May 1;122(17):174106. doi: 10.1063/1.1885467.

Abstract

The reaction path is an important concept of theoretical chemistry. We use a projection operator for the following of the Newton trajectory (NT) along the reaction valley of the potential energy surface. We describe the numerical scheme for the string method, adapting the proposal of a growing string (GS) by [Peters et al.,J. Chem. Phys. 120, 7877 (2004)]. The combination of the Newton projector and the growing string idea is an improvement of both methods, and a great saving of the number of iterations needed to find the pathway over the saddle point. This combination GS-NT is at the best of our knowledge new. We employ two different corrector methods: first, the use of projected gradient steps, and second a conjugated gradient method, the CG+ method of Liu, Nocedal, and Waltz, generalized by projectors. The executed examples are Lennard-Jones clusters, LJ(7) and LJ(22), and an N-methyl-alanyl-acetamide (alanine dipeptide) rearrangement between the minima C7(ax) and C5. For the latter, the growing string calculation is interfaced with the GASSIAN03 quantum chemical software package.

摘要

反应路径是理论化学中的一个重要概念。我们使用投影算符来追踪沿势能面反应谷的牛顿轨迹(NT)。我们描述了弦方法的数值方案,采用了[彼得斯等人,《化学物理杂志》120,7877(2004)]提出的生长弦(GS)方案。牛顿投影算符和生长弦思想的结合是对这两种方法的改进,并且极大地节省了找到越过鞍点路径所需的迭代次数。据我们所知,这种GS-NT的结合是全新的。我们采用两种不同的校正方法:第一,使用投影梯度步长;第二,一种共轭梯度方法,即由投影算符推广的刘、诺塞达尔和华尔兹的CG+方法。所执行的例子是 Lennard-Jones 簇,LJ(7)和 LJ(22),以及在极小值 C7(ax)和 C5 之间的 N-甲基-丙氨酰-乙酰胺(丙氨酸二肽)重排。对于后者,生长弦计算与 GASSIAN03 量子化学软件包相连接。

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