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寻找化学反应过渡态的高效方法:改进的 dimer 方法与分区有理函数优化方法的比较

Efficient methods for finding transition states in chemical reactions: comparison of improved dimer method and partitioned rational function optimization method.

作者信息

Heyden Andreas, Bell Alexis T, Keil Frerich J

机构信息

Department of Chemical Engineering, Hamburg University of Technology, D-21073 Hamburg, Germany.

出版信息

J Chem Phys. 2005 Dec 8;123(22):224101. doi: 10.1063/1.2104507.

Abstract

A combination of interpolation methods and local saddle-point search algorithms is probably the most efficient way of finding transition states in chemical reactions. Interpolation methods such as the growing-string method and the nudged-elastic band are able to find an approximation to the minimum-energy pathway and thereby provide a good initial guess for a transition state and imaginary mode connecting both reactant and product states. Since interpolation methods employ usually just a small number of configurations and converge slowly close to the minimum-energy pathway, local methods such as partitioned rational function optimization methods using either exact or approximate Hessians or minimum-mode-following methods such as the dimer or the Lanczos method have to be used to converge to the transition state. A modification to the original dimer method proposed by [Henkelman and Jonnson J. Chem. Phys. 111, 7010 (1999)] is presented, reducing the number of gradient calculations per cycle from six to four gradients or three gradients and one energy, and significantly improves the overall performance of the algorithm on quantum-chemical potential-energy surfaces, where forces are subject to numerical noise. A comparison is made between the dimer methods and the well-established partitioned rational function optimization methods for finding transition states after the use of interpolation methods. Results for 24 different small- to medium-sized chemical reactions covering a wide range of structural types demonstrate that the improved dimer method is an efficient alternative saddle-point search algorithm on medium-sized to large systems and is often even able to find transition states when partitioned rational function optimization methods fail to converge.

摘要

插值方法与局部鞍点搜索算法相结合可能是寻找化学反应过渡态最有效的方法。诸如增长弦法和推挤弹性带法等插值方法能够找到近似的最低能量路径,从而为连接反应物和产物状态的过渡态及虚模式提供良好的初始猜测。由于插值方法通常仅采用少量构型且在接近最低能量路径时收敛缓慢,因此必须使用局部方法,如使用精确或近似海森矩阵的分区有理函数优化方法,或诸如二聚体法或兰索斯法等最小模式跟踪方法来收敛到过渡态。本文提出了对[亨克尔曼和琼森,《化学物理杂志》111, 7010 (1999)]提出的原始二聚体方法的一种改进,将每个循环的梯度计算次数从六个减少到四个梯度或三个梯度加一个能量,并显著提高了该算法在量子化学势能面上的整体性能,在该势能面上力会受到数值噪声的影响。在使用插值方法后,对二聚体方法和成熟的分区有理函数优化方法在寻找过渡态方面进行了比较。对涵盖广泛结构类型的24个不同的中小规模化学反应的结果表明,改进后的二聚体方法是一种在中等规模到大系统上有效的替代鞍点搜索算法,并且在分区有理函数优化方法未能收敛时,它常常甚至能够找到过渡态。

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