Whittle Edward, Cahoon Edgar B, Subrahmanyam Satyam, Shanklin John
Biology Department, Brookhaven National Laboratory, Upton, New York, 11973, USA.
J Biol Chem. 2005 Aug 5;280(31):28169-76. doi: 10.1074/jbc.M504205200. Epub 2005 Jun 6.
A desaturase with 83% sequence identity to the coriander delta(4)-16:0-ACP desaturase was isolated from developing seeds of Hedera helix (English ivy). Expression of the ivy desaturase in Arabidopsis resulted in the accumulation of 16:1delta(4) and its expected elongation product 18:1delta(6) (petroselinic acid). Expression in Escherichia coli resulted in the accumulation of soluble, active protein that was purified to apparent homogeneity. In vitro assays confirmed delta(4) desaturation with 16:0-ACP; however, with 18:0-acyl acyl carrier protein (ACP) desaturation occurred at the delta(9) position. The ivy desaturase also converted 16:1delta(9)-ACP and 18:1delta(9)-ACP to the corresponding delta(4,9) dienes. These data suggest at least two distinct substrate binding modes, one placing C4 at the diiron active site and the other placing C9 at the active site. In the latter case, 18:0 would likely bind in an extended conformation as described for the castor desaturase with 9-carbons accommodated in the cavity beyond the dirron site. However, delta(4) desaturation would require the accommodation of 12 carbons for C16 substrates or 14 carbons for C18 substrates. The amino acids lining the substrate binding cavity of ivy and castor desaturases are conserved except for T117R and P179I (castor/ivy). Paradoxically, both substitutions, when introduced into the castor desaturase, favored the binding of shorter acyl chains. Thus, it seems likely that delta(4) desaturation would require a non-extended, perhaps U-shaped, substrate conformation. A cis double bond may facilitate the initiation of such a non-extended conformation in the monounsaturated substrates. The multifunctional properties of the ivy desaturase make it well suited for further dissection of the determinants of regiospecificity.
从常春藤(洋常春藤)发育中的种子中分离出一种与芫荽δ(4)-16:0-ACP去饱和酶具有83%序列同一性的去饱和酶。该常春藤去饱和酶在拟南芥中的表达导致了16:1δ(4)及其预期的延伸产物18:1δ(6)(岩芹酸)的积累。在大肠杆菌中的表达导致了可溶性活性蛋白的积累,该蛋白被纯化至表观均一性。体外试验证实了16:0-ACP的δ(4)去饱和作用;然而,对于18:0-酰基酰基载体蛋白(ACP),去饱和作用发生在δ(9)位置。常春藤去饱和酶还将16:1δ(9)-ACP和18:1δ(9)-ACP转化为相应的δ(4,9)二烯。这些数据表明至少存在两种不同的底物结合模式,一种是将C4置于双铁活性位点,另一种是将C9置于活性位点。在后一种情况下,18:0可能会以一种延伸构象结合,就像蓖麻去饱和酶那样,9个碳原子容纳在双铁位点之外的腔内。然而,δ(4)去饱和作用对于C16底物需要容纳12个碳原子,对于C18底物需要容纳14个碳原子。常春藤和蓖麻去饱和酶底物结合腔内衬的氨基酸除了T117R和P179I(蓖麻/常春藤)外是保守的。矛盾的是,当将这两个取代引入蓖麻去饱和酶时,都有利于较短酰基链的结合。因此,似乎δ(4)去饱和作用需要一种非延伸的、可能是U形的底物构象。顺式双键可能有助于在单不饱和底物中引发这种非延伸构象。常春藤去饱和酶的多功能特性使其非常适合进一步剖析区域特异性的决定因素。