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从不同地理位置分离得到的珊瑚球菌菌株的基因序列异质性。

Gene sequence heterogeneity of Corallococcus coralloides strains isolated from geographically diverse locations.

作者信息

Stackebrandt Erko, Päuker Orsola

机构信息

DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Mascheroder Weg 1b, D-38124 Braunschweig, Germany.

出版信息

Environ Microbiol. 2005 Jul;7(7):1017-23. doi: 10.1111/j.1462-2920.2005.00773.x.

DOI:10.1111/j.1462-2920.2005.00773.x
PMID:15946298
Abstract

Thirty-three strains classified as Corallococcus coralloides isolated from mostly soil samples in 14 countries of four continents, were subjected to phylogenetic analyses. Based on 16S rDNA analyses the strains form a highly related cluster, sharing above 98.7% sequence similarity. Four groups were recognized within this cluster, only one of which, containing two strains from St. Lucia, Lower Antilles, was exclusively defined by strains from the same sample. The other groups contained members from different countries, even continents. The largest group embraced the type strains of C. coralloides DSM 2259(T) and Corallococcus exiguus 14696(T) which were almost indistinguishable in their 16S rRNA gene sequence. Corallococcus macrosporus DSM 14697(T) grouped outside the C. coralloides cluster, showing a higher relationship to a member of Myxococcus. The topology of the tree generated on the basis of the partial gyrase B (gyrB) gene sequence supports the rRNA gene tree, though some differences in the order of branching were observed. As judged by the binary similarity values the higher resolution power of gyrB sequences was confirmed. From a taxonomic standpoint, the size of myxospores is not a valuable taxonomic criterion, as small- and medium-sized myxospores are members of the same group. If the species status of C. coralloides and C. exiguus is verified by other methods (e.g. DNA-DNA hybridisation, RiboTyping), the genus Corallococcus may embrace a broad range of yet-to-be described novel species. The presence of strains within the same sample displaying higher relatedness to strains from other locations points towards an intensive dispersal of myxospores across continents.

摘要

从四大洲14个国家的土壤样本中分离出33株被归类为珊瑚球菌的菌株,并对其进行了系统发育分析。基于16S rDNA分析,这些菌株形成了一个高度相关的聚类,序列相似性高于98.7%。在这个聚类中识别出四个组,其中只有一组包含来自小安的列斯群岛圣卢西亚的两株菌株,该组仅由来自同一样本的菌株定义。其他组包含来自不同国家甚至不同大陆的成员。最大的一组包含珊瑚球菌DSM 2259(T)和微小珊瑚球菌14696(T)的模式菌株,它们的16S rRNA基因序列几乎无法区分。大孢珊瑚球菌DSM 14697(T)聚类在珊瑚球菌聚类之外,与粘球菌的一个成员显示出更高的亲缘关系。基于部分gyrase B(gyrB)基因序列生成的树的拓扑结构支持rRNA基因树,尽管观察到分支顺序存在一些差异。从二元相似性值判断,证实了gyrB序列具有更高的分辨率。从分类学角度来看,粘孢子的大小不是一个有价值的分类标准,因为小和中等大小的粘孢子属于同一组。如果通过其他方法(如DNA-DNA杂交、核糖体分型)验证珊瑚球菌和微小珊瑚球菌的物种地位,珊瑚球菌属可能包含一系列有待描述的新物种。同一样本中的菌株与其他地点的菌株显示出更高的相关性,这表明粘孢子在各大洲广泛传播。

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